View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9320_high_2 (Length: 324)
Name: NF9320_high_2
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 32381385 - 32381690
Alignment:
| Q |
1 |
aacggtgttaatgagcttaacggtacgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32381385 |
aacggtgttaatgagcttaacggtacgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaa |
32381484 |
T |
|
| Q |
101 |
cggaaagaacggaactgattcaaagaccatgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32381485 |
cggaaagaacggaactgattcaaagaccatgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatac |
32381584 |
T |
|
| Q |
201 |
ctttaccggtgataacagttttagtgaaacgagttgaagcgaccatgtaataatcttttggttctttatctgcggttacaagaacaccaaagcattgtcc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32381585 |
ctttaccagtgataacagttttagtgaaacgagttgaagcgaccatgtaataatcttttggttctttatctgcggttacaagaacaccaaagcattgtcc |
32381684 |
T |
|
| Q |
301 |
tacgtg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
32381685 |
tacgtg |
32381690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 32387660 - 32387798
Alignment:
| Q |
6 |
tgttaatgagcttaacggtacgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaa |
105 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32387660 |
tgttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
32387759 |
T |
|
| Q |
106 |
agaacggaactgattcaaagaccatgcccagcccactgg |
144 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||| || ||||| |
|
|
| T |
32387760 |
agaacgaacctggttcaaagaccaagcccaaccaactgg |
32387798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 37640159 - 37640334
Alignment:
| Q |
26 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37640159 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37640258 |
T |
|
| Q |
126 |
accatgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatacc |
201 |
Q |
| |
|
|||| ||||| || || || || || || |||||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
37640259 |
accaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgtataatacc |
37640334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 37648446 - 37648621
Alignment:
| Q |
26 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37648446 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37648545 |
T |
|
| Q |
126 |
accatgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatacc |
201 |
Q |
| |
|
|||| ||||| || || || || || || |||||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
37648546 |
accaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgtataatacc |
37648621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 37634331 - 37634440
Alignment:
| Q |
26 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37634331 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37634430 |
T |
|
| Q |
126 |
accatgccca |
135 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37634431 |
accaagccca |
37634440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 37637245 - 37637354
Alignment:
| Q |
26 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37637245 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37637344 |
T |
|
| Q |
126 |
accatgccca |
135 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37637345 |
accaagccca |
37637354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 37645533 - 37645642
Alignment:
| Q |
26 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37645533 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37645632 |
T |
|
| Q |
126 |
accatgccca |
135 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37645633 |
accaagccca |
37645642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 37651358 - 37651467
Alignment:
| Q |
26 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37651358 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37651457 |
T |
|
| Q |
126 |
accatgccca |
135 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37651458 |
accaagccca |
37651467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University