View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9320_high_5 (Length: 241)
Name: NF9320_high_5
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 21827203 - 21826993
Alignment:
| Q |
13 |
catagaaattcaaacacaggaaaatctagaacagtaattactactcaatctcatgaacactttccatgcaaagatgtttcagtagcaataccttggccat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21827203 |
catagaaattcaaacacaggaaaatctagaacagtacttactactcaatctcatgaacactttccatgcaaagatgtttcagtagcaataccttggccat |
21827104 |
T |
|
| Q |
113 |
ttatgatcaaaggtgatccaccagaagttccggttcagcaatccaaaaagaactcgaaacgaatgcttccacctcttccaaagaaaggcaataataataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21827103 |
ttatgatcaaaggtgatccaccagaagttccggttcctcaatccaaaaagaactcgaaacgaatgcttccacctcttccaaagaaaggcaataataataa |
21827004 |
T |
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| Q |
213 |
tcatgcaacag |
223 |
Q |
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||||||||||| |
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| T |
21827003 |
tcatgcaacag |
21826993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 18945420 - 18945523
Alignment:
| Q |
110 |
catttatgatcaaaggtgatccaccagaagttccggttcagcaatccaaaaagaactcgaaacgaatgcttccacctcttccaaagaaaggcaataataa |
209 |
Q |
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|||||||||||||||||||||||||| | | || ||||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
18945420 |
catttatgatcaaaggtgatccaccaagaatcccagttcatcaatacaaaaagaactcaaaacgaatgcttccacctcttccaaaaaaaggcaataataa |
18945519 |
T |
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| Q |
210 |
taat |
213 |
Q |
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|||| |
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| T |
18945520 |
taat |
18945523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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