View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9320_low_1 (Length: 543)

Name: NF9320_low_1
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9320_low_1
NF9320_low_1
[»] chr4 (15 HSPs)
chr4 (18-278)||(7778312-7778573)
chr4 (297-539)||(7772784-7773028)
chr4 (207-362)||(7909478-7909633)
chr4 (201-354)||(7793236-7793391)
chr4 (18-203)||(7793022-7793207)
chr4 (174-265)||(7772694-7772785)
chr4 (46-203)||(7909668-7909825)
chr4 (485-543)||(7779132-7779190)
chr4 (46-132)||(8514290-8514376)
chr4 (398-459)||(7766540-7766601)
chr4 (398-459)||(7787570-7787631)
chr4 (401-450)||(7905442-7905491)
chr4 (398-455)||(50669919-50669976)
chr4 (361-459)||(37826024-37826120)
chr4 (401-457)||(49057716-49057772)
[»] chr7 (1 HSPs)
chr7 (399-460)||(48884782-48884843)
[»] chr1 (1 HSPs)
chr1 (401-450)||(24368006-24368055)
[»] chr6 (1 HSPs)
chr6 (403-458)||(14197239-14197293)
[»] chr5 (1 HSPs)
chr5 (404-455)||(9120671-9120722)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 7778312 - 7778573
Alignment:
Q  18 taactttctaccttgtaatgtgaattgataaaatgaggggaggagagtgctcttaggaaactaaaggaagtgtgagtgacattttgacatatcttaaagg 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7778312 taactttctaccttgcaatgtgaattgataaaatgaggggaggagagtgctcttaggaaactaaagggagtgtgagtgacattttgacatatcttaaagg 7778411  T
Q  118 aagttagtgtaatttgtccttaaacttaacatgatataagtgcaataaagtccacaataactaaataaagataaaagagcttcacaccaaagatacaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7778412 aagttagtgtaatttgtccttaaacttaacatgatataagtgcaataaagtccacaataactaaataaagataaaagagcttcacaccaaatatacaaac 7778511  T
Q  218 aaaaaagatagaatcggtcatgaaaaccagcaa-ccaacatgcccattatgtcaactattta 278  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  7778512 aaaaaagatagaatcggtcatgaaaaccaacaacccaacatgcccattatgtcaactattta 7778573  T

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Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 297 - 539
Target Start/End: Original strand, 7772784 - 7773028
Alignment:
Q  297 tagaaggcagaagagtttatactaacctgcttgatatattgtatagaatcacattttagtaacaagtccactgatattagagaacaaaactttannnnnn 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||          
T  7772784 tagaaggcagaagagtttatactaacctgcttgatatattgtatagaatcacattttaataacaagtccactgatattagagaacaaaaatttatttttt 7772883  T
Q  397 nccttcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtgacagattgagttacacatcgcnnnnnnngttgtcaatatt 496  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||    
T  7772884 tccttcaacatgtataaactcatcagattaatttaccatataaaacaatttcaagcagtgacagattgagttacacatcacaaacaaagttgtcaatatt 7772983  T
Q  497 tccaataatc--aaaacaagtaataaaccaataaacattccatga 539  Q
    |||||||| |  |  |||| |||| ||||||||||||||||||||    
T  7772984 tccaataagcctatgacaaataattaaccaataaacattccatga 7773028  T

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Target: chr4; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 207 - 362
Target Start/End: Complemental strand, 7909633 - 7909478
Alignment:
Q  207 aagatacaaacaaaaaagatagaatcggtcatgaaaaccagcaaccaacatgcccattatgtcaactatttaaacaatactgccatgaagtagaaggcag 306  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  7909633 aagaaacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgccaattatgtcaactatttaaaccatactgccatgaagtagaaggcag 7909534  T
Q  307 aagagtttatactaacctgcttgatatattgtatagaatcacattttagtaacaag 362  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7909533 aagaatgtatactaacctgcttgatatattgtatagaatcacattttaataacaag 7909478  T

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Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 7793236 - 7793391
Alignment:
Q  201 acaccaaagatacaaacaaaaaagatagaatcggtcatgaaaaccagcaaccaacatgcccattatgtcaactatttaaaca--atactgccatgaagta 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||  |||||| ||||||||     
T  7793236 acaccaaagatacaaacaaaaaagatagaatcggtcaagaaaaccaacaaccaacatgcccattatgtcaacaatttaaacaatatactgtcatgaagtt 7793335  T
Q  299 gaaggcagaagagtttatactaacctgcttgatatattgtatagaatcacatttta 354  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  7793336 gaaggcagaagaatgtatactaaccttcttgatatattgtatagaatcacatttta 7793391  T

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Target: chr4; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 7793022 - 7793207
Alignment:
Q  18 taactttctaccttgtaatgtgaattgataaaatgaggggaggagagtgctcttaggaaactaaaggaagtgtgagtgacattttgacatatcttaaagg 117  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||  |||||||||||||||| | |||||| |||||    
T  7793022 taacattctaccttgtaatgtgaattgataaaatgagggaaggagagtgctcttagaaaaccaaagggggtgtgagtgacattttaatatatctcaaagg 7793121  T
Q  118 aagttagtgtaatttgtccttaaacttaacatgatataagtgcaataaagtccacaataactaaataaagataaaagagcttcaca 203  Q
    ||||| ||||||||||  ||||||||||||||||||||||  ||||| |||||||||  |||||||||||  ||||||||||||||    
T  7793122 aagttcgtgtaatttgcgcttaaacttaacatgatataagcacaatacagtccacaaacactaaataaaggaaaaagagcttcaca 7793207  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 7772694 - 7772785
Alignment:
Q  174 ataactaaataaagataaaagagcttcacaccaaagatacaaacaaaaaagatagaatcggtcatgaaaaccagcaaccaacatgcccatta 265  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7772694 ataactaaataaagaaaaaagagcttcacaccaaatatacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgcccatta 7772785  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 7909825 - 7909668
Alignment:
Q  46 taaaatgaggggaggagagtgctcttaggaaactaaaggaagtgtgagtgacattttgacatatcttaaaggaagttagtgtaatttgtccttaaactta 145  Q
    |||||| |||||||||||||| |||||| ||| || ||   |||||| |||||||||||||||||| || |||||||||| ||||||   ||||||||||    
T  7909825 taaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaactta 7909726  T
Q  146 acatgatataagtgcaataaagtccacaataactaaataaagataaaagagcttcaca 203  Q
    |||||| |||||  | |||||||||||||  ||||  ||||||  ||| |||||||||    
T  7909725 acatgaaataagcacgataaagtccacaaacactatgtaaagaccaaaaagcttcaca 7909668  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 485 - 543
Target Start/End: Original strand, 7779132 - 7779190
Alignment:
Q  485 gttgtcaatatttccaataatcaaaacaagtaataaaccaataaacattccatgatata 543  Q
    |||||||||||||||||||| || ||||| || | ||||||||||||||||||||||||    
T  7779132 gttgtcaatatttccaataagcataacaaatagtcaaccaataaacattccatgatata 7779190  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 8514290 - 8514376
Alignment:
Q  46 taaaatgaggggaggagagtgctcttaggaaactaaaggaagtgtgagtgacattttgacatatcttaaaggaagttagtgtaattt 132  Q
    |||||||||| |||  ||||| | |||| ||||||||||  ||||||| ||||||||||||||||| || ||| |||||||||||||    
T  8514290 taaaatgaggagagatgagtgtttttagaaaactaaagggggtgtgagcgacattttgacatatctcaagggaggttagtgtaattt 8514376  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 7766601 - 7766540
Alignment:
Q  398 ccttcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtgaca 459  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||||||||||| |||||||    
T  7766601 ccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgaca 7766540  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 7787631 - 7787570
Alignment:
Q  398 ccttcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtgaca 459  Q
    |||||||| || || |||||||||||||||| |||||||| |||||||| |||| |||||||    
T  7787631 ccttcaacgtgcattaactcatcagattaatttaccatatgaaacaattacaagtagtgaca 7787570  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 7905491 - 7905442
Alignment:
Q  401 tcaacatgtataaactcatcagattaatctaccatataaaacaatttcaa 450  Q
    |||||||| |||||| |||||||||||| ||||||||||||| |||||||    
T  7905491 tcaacatgcataaacccatcagattaatttaccatataaaactatttcaa 7905442  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 50669976 - 50669919
Alignment:
Q  398 ccttcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagt 455  Q
    ||||||||||| ||||| | | ||||||| | ||||||||||||||||||||||||||    
T  50669976 ccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagt 50669919  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 37826024 - 37826120
Alignment:
Q  361 agtccactgatattagagaacaaaactttannnnnnnccttcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtgaca 459  Q
    |||||||||| ||||||||||||||| |||       ||||||| ||| |||| ||||||| |||||| ||||||||||||| ||||||  ||||||||    
T  37826024 agtccactgaaattagagaacaaaaccttattttt--ccttcaatatgcataacctcatcaaattaatttaccatataaaaccatttcagacagtgaca 37826120  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 49057716 - 49057772
Alignment:
Q  401 tcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtga 457  Q
    |||||||  ||||||||||||||||||| || |||||||||||| ||||||| ||||    
T  49057716 tcaacatccataaactcatcagattaatttagcatataaaacaacttcaagcggtga 49057772  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 48884843 - 48884782
Alignment:
Q  399 cttcaacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtgacag 460  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||    
T  48884843 cttcaacatgtataaactcatcagattaatttacgacataaaacaatttcaagcaatgacag 48884782  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 24368055 - 24368006
Alignment:
Q  401 tcaacatgtataaactcatcagattaatctaccatataaaacaatttcaa 450  Q
    |||||||| |||||||||||| | |||| |||||||||||||||||||||    
T  24368055 tcaacatggataaactcatcaaactaatttaccatataaaacaatttcaa 24368006  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 14197239 - 14197293
Alignment:
Q  403 aacatgtataaactcatcagattaatctaccatataaaacaatttcaagcagtgac 458  Q
    |||||| |||||||||||| |||||| ||| |||||||||||||| ||||||||||    
T  14197239 aacatgcataaactcatcaaattaat-tacaatataaaacaattttaagcagtgac 14197293  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 9120722 - 9120671
Alignment:
Q  404 acatgtataaactcatcagattaatctaccatataaaacaatttcaagcagt 455  Q
    ||||| |||||||||| ||| |||| ||||| ||||||||||||||||||||    
T  9120722 acatgcataaactcatgagactaatttaccaaataaaacaatttcaagcagt 9120671  T

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