View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9320_low_14 (Length: 278)

Name: NF9320_low_14
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9320_low_14
NF9320_low_14
[»] chr3 (12 HSPs)
chr3 (27-263)||(9580913-9581149)
chr3 (19-251)||(19684203-19684435)
chr3 (23-251)||(760473-760701)
chr3 (58-263)||(29682022-29682225)
chr3 (19-164)||(41820132-41820276)
chr3 (23-164)||(46859890-46860030)
chr3 (58-251)||(39153675-39153865)
chr3 (59-251)||(22835319-22835507)
chr3 (58-246)||(32744747-32744935)
chr3 (25-234)||(37466649-37466858)
chr3 (66-234)||(3323255-3323422)
chr3 (119-234)||(6794333-6794447)
[»] chr1 (15 HSPs)
chr1 (19-251)||(8551101-8551333)
chr1 (25-246)||(40122516-40122736)
chr1 (50-251)||(834481-834666)
chr1 (19-164)||(47114588-47114732)
chr1 (19-164)||(28241805-28241949)
chr1 (19-146)||(3847446-3847573)
chr1 (34-164)||(7482840-7482969)
chr1 (36-164)||(34602928-34603055)
chr1 (19-168)||(37167715-37167859)
chr1 (65-164)||(34603057-34603155)
chr1 (26-234)||(47098359-47098568)
chr1 (25-234)||(32889792-32890002)
chr1 (203-234)||(197231-197262)
chr1 (203-234)||(27104113-27104144)
chr1 (117-162)||(47102465-47102510)
[»] chr7 (8 HSPs)
chr7 (19-251)||(41649323-41649556)
chr7 (19-263)||(38671524-38671767)
chr7 (19-251)||(25615479-25615711)
chr7 (19-204)||(3258410-3258595)
chr7 (58-161)||(31518466-31518570)
chr7 (25-234)||(23402546-23402754)
chr7 (25-110)||(2580847-2580933)
chr7 (206-234)||(2580743-2580771)
[»] chr5 (8 HSPs)
chr5 (19-251)||(31182594-31182827)
chr5 (94-250)||(8566262-8566407)
chr5 (58-252)||(5887729-5887922)
chr5 (22-164)||(27638223-27638364)
chr5 (36-248)||(16451729-16451942)
chr5 (133-251)||(33831416-33831534)
chr5 (66-234)||(24553102-24553269)
chr5 (25-234)||(31300129-31300338)
[»] chr2 (11 HSPs)
chr2 (19-246)||(14634145-14634370)
chr2 (37-249)||(724060-724271)
chr2 (50-260)||(34140076-34140285)
chr2 (25-256)||(11151901-11152131)
chr2 (19-164)||(42288717-42288861)
chr2 (58-251)||(42362014-42362206)
chr2 (19-112)||(14202827-14202920)
chr2 (19-102)||(14635189-14635272)
chr2 (156-251)||(14202721-14202815)
chr2 (109-246)||(11690213-11690348)
chr2 (66-162)||(7815678-7815774)
[»] chr6 (6 HSPs)
chr6 (19-263)||(16568665-16568909)
chr6 (19-263)||(16566830-16567072)
chr6 (19-164)||(2973549-2973693)
chr6 (58-263)||(28137712-28137916)
chr6 (59-193)||(5043083-5043217)
chr6 (25-162)||(31937002-31937140)
[»] chr4 (10 HSPs)
chr4 (19-162)||(5870009-5870152)
chr4 (19-164)||(378794-378938)
chr4 (50-204)||(41963862-41964016)
chr4 (19-141)||(12072807-12072928)
chr4 (78-164)||(46702974-46703060)
chr4 (181-251)||(5871605-5871674)
chr4 (202-251)||(47038723-47038772)
chr4 (212-263)||(13009733-13009784)
chr4 (59-151)||(47038816-47038909)
chr4 (202-230)||(26699990-26700018)
[»] chr8 (6 HSPs)
chr8 (58-248)||(6598634-6598823)
chr8 (58-248)||(6674087-6674276)
chr8 (133-250)||(41365164-41365280)
chr8 (72-162)||(1292855-1292946)
chr8 (25-162)||(19751927-19752065)
chr8 (92-157)||(5990183-5990248)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 27 - 263
Target Start/End: Original strand, 9580913 - 9581149
Alignment:
Q  27 aatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9580913 aatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgc 9581012  T
Q  127 gatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactattt 226  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  9581013 gatttatggataaggttgtcgtaccttgggtcgtacgcttcaaccgtgatgcgattttcactggcgcggtgcgatttttgtctgtcactgtgtactattt 9581112  T
Q  227 aagtgtttaagctcatttttgaagggggaagagagag 263  Q
    |||||||||||||||||||||| |||| |||||||||    
T  9581113 aagtgtttaagctcatttttgatggggaaagagagag 9581149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 19684435 - 19684203
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  19684435 aagctgaaaatcgtggcgcgattttcagaagcgtggcgcgattttgcttgcagaacggatggtttttgctgaagcaaatcgtggcacgattttgggcagg 19684336  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||| | | ||||||||||||||||||||    
T  19684335 cgtgacgcaatttatgaataaggttgtcgtaccttgggtcgtacgcttcaaccgtgacacgattttcactggcgcagtgcgatttttgtctgtcactgtg 19684236  T
Q  219 tactatttaagtgtttaagctcatttttgaagg 251  Q
    ||||||||||||||||  |||||||||||||||    
T  19684235 tactatttaagtgtttcggctcatttttgaagg 19684203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 760473 - 760701
Alignment:
Q  23 tgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtg 122  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||||| |||  ||||    
T  760473 tgaaaatcgtggcgcgattttcagaggcgtggcgcgattttgctggcagaatggatggtttttgctgaagcaaatcgtgatgcgattttgtgcaaccgtg 760572  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtact 222  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||| |||| |  |||||||||| ||| |   | ||||||||||||||||||||||||    
T  760573 acgcgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtaacacgattttcacaggcacaatgagatttttgtctgtcactgtgtact 760672  T
Q  223 atttaagtgtttaagctcatttttgaagg 251  Q
    |||||||||||| ||||||||||||||||    
T  760673 atttaagtgtttcagctcatttttgaagg 760701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 263
Target Start/End: Original strand, 29682022 - 29682225
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  | | ||| |||||||||||  |||||||||||||||||||||||||    
T  29682022 gattttgctggcagaatggatggtttctgctgaagcaaatcgtgacgcgattg-gtgaaggtgtgacgcgattggtggataaggttgtcgtaccttgggt 29682120  T
Q  158 cgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagggggaag 257  Q
    ||||||||||| |||||| | ||||||   |||||||||| || ||||||||||||| ||||||||||||||||||| |||   |||||||||| |||||    
T  29682121 cgtacacttcaaccgtgacgtgattttggatggcgcggcgcga-ttttgtctgtcaccgtgtactatttaagtgtttcagccattttttgaaggaggaag 29682219  T
Q  258 agagag 263  Q
    ||||||    
T  29682220 agagag 29682225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 41820276 - 41820132
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  41820276 aagctgaaaatcgtggcgcgattttcagaggcgtggcgcgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcacgattttgtgca-g 41820178  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
     ||||| |||||| | |||||||  || ||||||||||||||||||    
T  41820177 tgtgacacgatttctagataaggacgttgtaccttgggtcgtacac 41820132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 46859890 - 46860030
Alignment:
Q  23 tgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtg 122  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  46859890 tgaaaatcgtggcgcgattttcagaggcatggcgcgattttgctggcaaaatggatggtttctgctgaagcaaatcgtggcgcgattttgtgca-gcgtg 46859988  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    || |||||| |||||||||| || ||||||||| ||||||||    
T  46859989 acacgatttctggataaggtcgttgtaccttggatcgtacac 46860030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 39153865 - 39153675
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  39153865 gattttgatggcagaatggatggtttctgctgaaggcaaaacgtgacgcgattt-gtgcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 39153767  T
Q  157 tcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagg 251  Q
    |||||| | |||  |||||  |||||||   ||||||| || |||||   | |||||||||||||||||||||||||| ||||||||||||||||    
T  39153766 tcgtactcatcaatcgtgacacgattttggatggcgcgacgcgattt---tgtgtcactgtgtactatttaagtgtttcagctcatttttgaagg 39153675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 22835507 - 22835319
Alignment:
Q  59 attttgctggcagaatggatggtttctgctgaagcaaa-tcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggt 157  Q
    |||||| |||||||| | |||||||||||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||    
T  22835507 attttgttggcagaacgtatggtttctgctgaaggaaaatcgtggcgcgattt-gtgcatgcgtgacgcgatttatggataaggttgtcgtaccttaggt 22835409  T
Q  158 cgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagg 251  Q
    |||||   |||  |||||  |||||||   |||||||||| || ||||||   ||||||| |||||||||||||||| ||||||||||||||||    
T  22835408 cgtacttatcaatcgtgacacgattttgggtggcgcggcgcga-ttttgt---tcactgtatactatttaagtgtttcagctcatttttgaagg 22835319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 32744935 - 32744747
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaagc--aaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgg 155  Q
    ||||||| |||||||| | |||||| |||||||||   |||||||||| |||||| | |||||||| ||||||||| ||||||||||||||||||||| |    
T  32744935 gattttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcacgattt-gtgcaggcgtaacgcgatttctggataaggttgtcgtacctttg 32744837  T
Q  156 gtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcattttt 246  Q
    ||||||| | |||  |||||  |||||||   ||||| | |  || ||||||||||||||||||||||||||||||||| |||||||||||    
T  32744836 gtcgtactcatcaatcgtgacacgattttggatggcgtgacacga-ttttgtctgtcactgtgtactatttaagtgtttcagctcattttt 32744747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 37466858 - 37466649
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaa-gcaaatcgtggcgcgattttgggcaggcgtga 123  Q
    |||||||||||||| ||||  ||| |||| || ||||||  |||||||||||||||||||||||||| ||||| || ||| |||||| |  | ||||||     
T  37466858 aaaatcgtggcgcggttttgggagccgtgacgcgattttcatggcagaatggatggtttctgctgaaggcaaaccgcggcacgatttagtactggcgtgg 37466759  T
Q  124 cgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtacta 223  Q
    |||||||| ||||||| || || |||||||| ||||||   ||   |||||  |||||| | || |||||  |  || ||||||||||||||||||||||    
T  37466758 cgcgatttgtggataaagtcgttgtaccttgagtcgtatgtttataccgtggcgcgattctgacaggcgcaacacga-ttttgtctgtcactgtgtacta 37466660  T
Q  224 tttaagtgttt 234  Q
    | |||||||||    
T  37466659 tgtaagtgttt 37466649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 3323255 - 3323422
Alignment:
Q  66 tggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||||||||||||| ||| |||||||| ||||| | |||||||||| |  | |||||| |||||||| |||||||||  || ||||||||||||||||      
T  3323255 tggcagaatggatgtttt-tgctgaaggcaaattgcggcgcgatttagtactggcgtggcgcgatttgtggataaggacgttgtaccttgggtcgtacgt 3323353  T
Q  165 tt-catccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgttt 234  Q
    ||  |  | ||   ||||| | || ||||||||| ||  ||||||||||||||||||||||||||||||||    
T  3323354 ttaaaatcatggcacgattctgacaggcgcggcgcga--tttgtctgtcactgtgtactatttaagtgttt 3323422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 6794333 - 6794447
Alignment:
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    |||| |||||||| ||||||||||  | ||||||||||||||||| || |  ||||    |||||| || |||| | || |||||| |||||||||||||    
T  6794333 cgtggcgcgatttttggataaggtcattgtaccttgggtcgtacatttaaatcgtggcatgattttaacaggcgtgacgcgatttt-gtctgtcactgtg 6794431  T
Q  219 tactatttaagtgttt 234  Q
    |||||| |||||||||    
T  6794432 tactatataagtgttt 6794447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8551333 - 8551101
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||     
T  8551333 aagctgaaaatcgtggcgcgattttcagaggcgtggcgcgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcacgattttgtgcagc 8551234  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  |||||||||   |||||| || ||||||||||||||||||||    
T  8551233 cgtgacgcgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgcgattttcctaggcgcgacgcgatttttgtctgtcactgtg 8551134  T
Q  219 tactatttaagtgtttaagctcatttttgaagg 251  Q
    |||||||||||||||| ||||||||||||||||    
T  8551133 tactatttaagtgtttcagctcatttttgaagg 8551101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 40122736 - 40122516
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtga 123  Q
    ||||| ||| ||| |||||  ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||  | ||||||||||    
T  40122736 aaaattgtgccgcaattttgggaggcgtggcgcgattttggtggcagaatggatggtttctgctgaaggcaaatcgtggcacgattg-gtgcaggcgtga 40122638  T
Q  124 cgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtacta 223  Q
    | |||||| |||||||||||||||||||||||||||||| ||||| |||||  |||||||||||| ||||| || || ||||||||||||||||||||||    
T  40122637 cacgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgcgattttcactagcgcgacgcga-ttttgtctgtcactgtgtacta 40122539  T
Q  224 tttaagtgtttaagctcattttt 246  Q
    ||||||||||  |||||||||||    
T  40122538 tttaagtgttccagctcattttt 40122516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 50 - 251
Target Start/End: Complemental strand, 834666 - 834481
Alignment:
Q  50 cgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgta 149  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||    
T  834666 cgtggcgcgattttgctggcagaatggatggtttctgctaaagcaaatcgtggcgcgattctgtgcaggcgtgacacgatttgtggataaggttgtcgta 834567  T
Q  150 ccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaa 249  Q
    ||||||||||||| ||||| |||               |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  834566 ccttgggtcgtacgcttcaaccg---------------tggcgcggcgcga-ttttgtctgtcactgtgtactatttaagtgtttcagctcatttttgaa 834483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 47114588 - 47114732
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |    
T  47114588 aagctgaaaatcgtggcgcgattttcagaggcgtggtgcgattttgctggtagaatggatggtttctgctgaagcaaatcatggcgcgattttgtgca-g 47114686  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||||| |||||| ||||||||| ||| ||||||||||||||||||    
T  47114687 cgtgacacgatttttggataaggctgttgtaccttgggtcgtacac 47114732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 28241805 - 28241949
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| ||| |    
T  28241805 aagctgaaaattgtggtgcgattttcagaggcgtggcgcgattttgcttgcagaatggatggtttctgctgaagcaaatcatggcgcaattttgtgca-g 28241903  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||||| |||||| |||||||||  || ||||||||||||||||||    
T  28241904 cgtgacacgatttctggataaggccgttgtaccttgggtcgtacac 28241949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 3847573 - 3847446
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| || ||    
T  3847573 aagctgaaaatcgtggcgtgattttcagaggcatggcgcgattttgctggcagaatggatagtttctgctgaaggaaatcatggcgcgattttgtgcggg 3847474  T
Q  119 cgtgacgcgatttatggataaggttgtc 146  Q
    |||| |||||||| ||||||||||||||    
T  3847473 cgtggcgcgatttgtggataaggttgtc 3847446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 7482969 - 7482840
Alignment:
Q  34 gcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttat 133  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||| |||||| |    
T  7482969 gcgcgattttcagaggcgaggcgcgattttgctggcagaatggatggtttctgctgaagcaaatcatggcgcgattttgtgca-gtgtgacacgatttct 7482871  T
Q  134 ggataaggttgtcgtaccttgggtcgtacac 164  Q
    ||||||||| || ||||||||||||||||||    
T  7482870 ggataaggtcgttgtaccttgggtcgtacac 7482840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 34603055 - 34602928
Alignment:
Q  36 gcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatgg 135  Q
    ||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||| |||    
T  34603055 gcgattttcagaggcgtggtgccattttgctggtagaatggatggtttctgctgaagcaaattgtggcgcgattttgtgca-gcgtgacacaatttctgg 34602957  T
Q  136 ataaggttgtcgtaccttgggtcgtacac 164  Q
    ||||||| || ||||||||||||||||||    
T  34602956 ataaggtcgttgtaccttgggtcgtacac 34602928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 37167715 - 37167859
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaa-gcaaatcgtggcgcgattttgggcag 117  Q
    ||||||||||| |||||||||||||||| |||||| |  ||||||| |||||||| | ||||||||||||||| |||||||||||||||| || | ||||    
T  37167715 aagctgaaaattgtggcgcgattttcagtggcgtgacacgattttgttggcagaacgtatggtttctgctgaaggcaaatcgtggcgcga-ttggtgcag 37167813  T
Q  118 gcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttca 168  Q
    | ||     ||||| |||||||||||||||||||||||||||||| |||||    
T  37167814 gtgt-----gatttgtggataaggttgtcgtaccttgggtcgtacgcttca 37167859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 34603057 - 34603155
Alignment:
Q  65 ctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||| |||||||||| || ||||||||||||||||||    
T  34603057 ctggtagaatggatggtttctgctgaagcaaatagtggcgcgattttgtgca-gcgtgacacaatttctggataaggtcgttgtaccttgggtcgtacac 34603155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 47098359 - 47098568
Alignment:
Q  26 aaatcgtggcgcgattttcagaggcgtggcgtgattttgct-ggcagaatggatggtttctgctgaagc-aaatcgtggcgcgattttgggcaggcgtga 123  Q
    ||||||||||||||||||  ||| |||| || |||||  || || |||||||||| ||| ||||||||  |||||| |||||||||  |  | ||||||     
T  47098359 aaatcgtggcgcgattttgggagccgtgacgcgatttctcttggtagaatggatgtttt-tgctgaaggtaaatcgcggcgcgattcagtactggcgtgg 47098457  T
Q  124 cgcgatttatggataaggttgtcgtaccttgggtcgtacactt-catccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtact 222  Q
    ||| ||||||||||||||| || ||||||||||||||||  ||  |  ||||  |||||| | || ||||||||| || ||| |||||||||||||||||    
T  47098458 cgcaatttatggataaggtcgttgtaccttgggtcgtacgtttaaaatcgtggcgcgattctgacaggcgcggcgcga-tttcgtctgtcactgtgtact 47098556  T
Q  223 atttaagtgttt 234  Q
    || |||||||||    
T  47098557 atataagtgttt 47098568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 32890002 - 32889792
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgct-ggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtg 122  Q
    ||||||||||| |||||||  ||| |||| |  |||| |||| |||| |||||||| ||| |||||||| ||||||| ||||| ||||||  | | ||||    
T  32890002 aaaatcgtggcacgattttgggagccgtgacacgattctgcttggcaaaatggatgtttt-tgctgaaggcaaatcgcggcgc-attttgtactgacgtg 32889905  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatc-cgtgatgcgattttca-ctggcgcggcgtgatttttgtctgtcactgtgta 220  Q
     | |||||| |||||||||| || |||||||||||||||| ||| |   ||||   ||||||| | | |||||||||||||||  |||||||||||||||    
T  32889904 gcacgatttgtggataaggtcgttgtaccttgggtcgtacgcttaaaatcgtggcacgatttttagcaggcgcggcgtgatttc-gtctgtcactgtgta 32889806  T
Q  221 ctatttaagtgttt 234  Q
    |||| |||||||||    
T  32889805 ctatataagtgttt 32889792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 234
Target Start/End: Complemental strand, 197262 - 197231
Alignment:
Q  203 tttgtctgtcactgtgtactatttaagtgttt 234  Q
    ||||||||||||||||||||||||||||||||    
T  197262 tttgtctgtcactgtgtactatttaagtgttt 197231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 234
Target Start/End: Original strand, 27104113 - 27104144
Alignment:
Q  203 tttgtctgtcactgtgtactatttaagtgttt 234  Q
    ||||||||||||||||||||||||||||||||    
T  27104113 tttgtctgtcactgtgtactatttaagtgttt 27104144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 47102465 - 47102510
Alignment:
Q  117 ggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtac 162  Q
    |||||| |||||||| |||||||||| || ||||||||||||||||    
T  47102465 ggcgtggcgcgatttgtggataaggtcgttgtaccttgggtcgtac 47102510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 41649556 - 41649323
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgatttt-gctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcag 117  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  41649556 aagctgaaaatcgtggcgcgattttcagaggcgtggcgcaatttttgctggcagaatggatggtttctgcttaagcaaatcgtggcgcaattttgtgcag 41649457  T
Q  118 gcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgt 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||| |  |||||||||||||||||||    
T  41649456 gcgtgacgcgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgcgattttcactggcgcgacacgatttttgtctgtcactgt 41649357  T
Q  218 gtactatttaagtgtttaagctcatttttgaagg 251  Q
    ||||||||||||||||| ||||||||||||||||    
T  41649356 gtactatttaagtgttttagctcatttttgaagg 41649323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 38671767 - 38671524
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||    
T  38671767 aagctgaaaatcgtggcgcgattttcaaaggcgtggcgcgattttgctggcagaatggatggtttttactaaagcaaatcgtggcgcgattttgtgcagg 38671668  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    |||||||| |||| |||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||| || |||||||||||||| ||    
T  38671667 cgtgacgcaatttgtggataaggttgtcgtgccttgggtcgtacgcttcaaccgtggtgcgattttcactagcgcggcgcga-ttttgtctgtcactttg 38671569  T
Q  219 tactatttaagtgtttaagctcatttttgaagggggaagagagag 263  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||    
T  38671568 tactatttaagtgtttcagctcatttttgaaggaagaagagagag 38671524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 25615479 - 25615711
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  25615479 aagctgaaaattgtggcgcgattttcagaggcgtggcgcgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgtgcagc 25615578  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    |||||  |||||| | |||||||||||||||||||||||||||| ||||| |||||| ||||||||| | || |||||| ||||||||  ||||||||||    
T  25615579 cgtgatacgatttgtcgataaggttgtcgtaccttgggtcgtacgcttcaaccgtgacgcgattttcccaggtgcggcgcgatttttgcatgtcactgtg 25615678  T
Q  219 tactatttaagtgtttaagctcatttttgaagg 251  Q
    |||||||||||||||| ||||||||||||||||    
T  25615679 tactatttaagtgtttcagctcatttttgaagg 25615711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 3258410 - 3258595
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  3258410 aagctgaaaatcgtggcgtgattttcagaggtgtggcgcgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgtgca-c 3258508  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac-ttcatccgtgatgcgattttcactggcgcggcgtgatttt 204  Q
    ||||||||||||| |||||||||| || ||||||||||||||||||  | | |||||  ||||||||  ||||||||||| ||||||    
T  3258509 cgtgacgcgatttgtggataaggtcgttgtaccttgggtcgtacacaatgaaccgtggcgcgattttagctggcgcggcgcgatttt 3258595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 31518466 - 31518570
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaagc-aaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    |||||| |||| |||||||||||||| ||||||||  ||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  31518466 gattttcctggtagaatggatggtttatgctgaaggtaaatcgtggtgcgattttgtgcaggcgtgatgcgatttctggataaggttgtcgtaccttggg 31518565  T
Q  157 tcgta 161  Q
    |||||    
T  31518566 tcgta 31518570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 23402546 - 23402754
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgct-ggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtg 122  Q
    |||||||||||||||||||   || |||| || |||||  || ||||||||||||  ||| |||||||| ||||||| ||| | |||| |  | ||||||    
T  23402546 aaaatcgtggcgcgattttggaagtcgtgacgcgatttctcttggcagaatggat--tttttgctgaaggcaaatcgcggcacaatttagtactggcgtg 23402643  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtact 222  Q
     ||| |||| ||||||||||||| ||||||||||||||||  ||    ||||  |||||| | || ||||||||| || ||| |||||||||||||||||    
T  23402644 gcgcaatttgtggataaggttgttgtaccttgggtcgtacgtttatatcgtggcgcgattctgacaggcgcggcgcga-tttcgtctgtcactgtgtact 23402742  T
Q  223 atttaagtgttt 234  Q
    || |||||||||    
T  23402743 atataagtgttt 23402754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 2580933 - 2580847
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgc-tggcagaatggatggtttctgctgaa-gcaaatcgtggcgcgattt 110  Q
    |||||||||||||||||||  ||| ||||||| |||| ||| ||||||||||||| |||| ||||||| |||||||| ||||||||||    
T  2580933 aaaatcgtggcgcgattttgggagccgtggcgcgattctgcttggcagaatggat-gtttttgctgaaggcaaatcgcggcgcgattt 2580847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 2580771 - 2580743
Alignment:
Q  206 gtctgtcactgtgtactatttaagtgttt 234  Q
    |||||||||||||||||||||||||||||    
T  2580771 gtctgtcactgtgtactatttaagtgttt 2580743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 31182594 - 31182827
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgatttt-gctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcag 117  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  31182594 aagctgaaaatcgtagcgcgattttcagagacgtggcgcgatttttgctggcataatggatggtttttgctgaagcaaatcgtggcgcgattttgtgcag 31182693  T
Q  118 gcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgt 217  Q
    | |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  ||||||||||| ||||| ||| |||||||||||||||||||    
T  31182694 gagtgacgcgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgcgattttcacaggcgcagcgcgatttttgtctgtcactgt 31182793  T
Q  218 gtactatttaagtgtttaagctcatttttgaagg 251  Q
    ||||||||||||||||| | ||||||||| ||||    
T  31182794 gtactatttaagtgtttcatctcattttttaagg 31182827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 8566407 - 8566262
Alignment:
Q  94 aaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgc 193  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||          |||||||||||    
T  8566407 aaatcgtggcgcgattttgtgcaggcgtgacgcaatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccg----------ttcactggcgc 8566318  T
Q  194 ggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaag 250  Q
    |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8566317 ggcgcga-ttttgtctgtcactgtgtactatttaagtgtttcagctcatttttgaag 8566262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 5887922 - 5887729
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaagcaaa-tcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    ||||||| |||||||| | |||||||||||||||| ||| |||||| ||||||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  5887922 gattttgttggcagaacgtatggtttctgctgaaggaaaatcgtggtgcgattt-gtgcaggtgtgacgcgatttatggataaggttgtcgtaacttggg 5887824  T
Q  157 tcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaaggg 252  Q
    |||||| | |||  |||||  || ||||   |||||||| | || ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5887823 tcgtactcatcaatcgtgacacggttttgggtggcgcggtgcga-ttttgtcagtcactgtgtactatttaagtgttttagctcatttttgaaggg 5887729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 27638364 - 27638223
Alignment:
Q  22 ctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgt 121  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||| ||||    
T  27638364 ctgaaaatcgtgtcgcgattttcagaggcgtggcacgattttgctggcagaatggatggtttctgtcgaagcaaattgtggcgcgattttgtgca-gcgt 27638266  T
Q  122 gacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    ||| |||||| | ||||||||  | ||||||||||||||||||    
T  27638265 gacacgatttctagataaggtcattgtaccttgggtcgtacac 27638223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 16451729 - 16451942
Alignment:
Q  36 gcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaa-atcgtggcgcgattttgggcaggcgtgacgcgatttatg 134  Q
    ||||||||  |||||||| || ||||||  ||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||| ||    
T  16451729 gcgattttgggaggcgtgtcgcgattttcttggcagaatggatggtttctgctgaagaaatatcgtggcgcgattttgtacaggcgtgacgcgatttctg 16451828  T
Q  135 gataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcga-ttttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtt 233  Q
    ||||||| ||| |||| ||||||| ||| ||| |  |||| | ||| ||||||| |||||| |  || |||||| ||||||||||| |||| ||||  ||    
T  16451829 gataaggctgttgtacattgggtcatacgcttaaatcgtggtacgatttttcacaggcgcgacacga-ttttgtttgtcactgtgttctatataagcatt 16451927  T
Q  234 taagctcatttttga 248  Q
    | || ||||||||||    
T  16451928 tcagttcatttttga 16451942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 33831416 - 33831534
Alignment:
Q  133 tggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgt 232  Q
    |||||||| |||||||||||||  ||||||  |||| |||||  || |||||  | ||| ||||| ||||||||||||||||||||||||||||||| ||    
T  33831416 tggataagattgtcgtaccttgtatcgtacgtttcaaccgtggcgcaattttttcaggcacggcgcgatttttgtctgtcactgtgtactatttaagcgt 33831515  T
Q  233 ttaagctcatttttgaagg 251  Q
    || ||||||||||| ||||    
T  33831516 ttcagctcattttttaagg 33831534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 24553102 - 24553269
Alignment:
Q  66 tggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||||||||||||| ||| |||||||| |||||||||||  ||||| |  |  ||||| |||||||| |||||||||  || ||||||||||||||||      
T  24553102 tggcagaatggatgtttt-tgctgaaggcaaatcgtggcatgatttagtactagcgtggcgcgatttgtggataaggccgttgtaccttgggtcgtacgt 24553200  T
Q  165 ttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgttt 234  Q
    ||   |||||  |||||| | || ||||||||| || ||| ||||||||||||||||||| |||||||||    
T  24553201 ttataccgtggcgcgattctgacaggcgcggcgcga-tttcgtctgtcactgtgtactatataagtgttt 24553269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 31300129 - 31300338
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgct-ggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtg 122  Q
    |||||||||||||||||||   || |||| || ||||||||| ||||||||||||| ||| |||||||| ||||| |  ||||||||| |  | ||||||    
T  31300129 aaaatcgtggcgcgattttggaagccgtgacgcgattttgcttggcagaatggatgtttt-tgctgaaggcaaattgcagcgcgatttggtactggcgtg 31300227  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtact 222  Q
     |||||||  |||||||||  || ||| ||||||||||||  || |  |||| | ||||||| || |||||||||  ||||  |||||||||||||||||    
T  31300228 gcgcgattggtggataaggacgttgtatcttgggtcgtacgtttaaatcgtggtacgattttaacaggcgcggcgccatttc-gtctgtcactgtgtact 31300326  T
Q  223 atttaagtgttt 234  Q
    || |||| ||||    
T  31300327 atataagggttt 31300338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 14634370 - 14634145
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  14634370 aagctgaaaattgtggcgcgattttcagaggcgtggcgcgatcttgctggcaaaatggatggtttctgctgaagcaagtcgtggcgcgattttgtgcagg 14634271  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
     ||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||  || ||||||| |||||||||| || |||||||||||||||||    
T  14634270 tgtgtcgcgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgc-attttcattggcgcggcgcga-ttttgtctgtcactgtg 14634173  T
Q  219 tactatttaagtgtttaagctcattttt 246  Q
    | |||||||||||||| |||||||||||    
T  14634172 tcctatttaagtgtttcagctcattttt 14634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 724271 - 724060
Alignment:
Q  37 cgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatgga 136  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||| ||||| |||||| ||||    
T  724271 cgattttcagtggcgtggcgcgattttgctggtagaatggatggtttctgttgaagcaaatcgtggcgcgattttgtgtaggtgtgacacgatttgtgga 724172  T
Q  137 taaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaa 236  Q
    |||| ||||||||||||||||||||| ||||| |||||  |||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |    
T  724171 taagattgtcgtaccttgggtcgtacgcttcaaccgtggcgcgattttcactggcgcgacgcga-ttttgtctgtcactgtgtactatttaagtgtttca 724073  T
Q  237 gctcatttttgaa 249  Q
    |||||||||||||    
T  724072 gctcatttttgaa 724060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 34140285 - 34140076
Alignment:
Q  50 cgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgta 149  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||  |||||| |||||||||| |||||||||||||||||    
T  34140285 cgtggcgcgattttgctagcagaattgatggtttctgctgaagcaaatcatggcgcaattttgtacaggcgcgacgcgatttgtggataaggttgtcgta 34140186  T
Q  150 ccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaa 249  Q
    ||||||||||||| ||||| ||||   |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34140185 ccttgggtcgtacgcttcaaccgtagcgcgatttttactggcgcggcgcga-ttttgtctgtcactgtgtactatttaagtgtttcagctcatttttgaa 34140087  T
Q  250 gggggaagaga 260  Q
    || | ||||||    
T  34140086 ggagtaagaga 34140076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 11152131 - 11151901
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtga 123  Q
    ||||||||| || ||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||  | ||||||||||    
T  11152131 aaaatcgtgccgtgattttgggaggcgtggcgcgattttggtggcagaatggatggtttctgctgaaggcaaatcatggtgcgattg-gtgcaggcgtga 11152033  T
Q  124 cgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtacta 223  Q
    |||| ||| ||||||||||||||||||||||||||| || ||||| | |||  |||||||||||||||||  || || |||||||| ||||||||||||     
T  11152032 cgcggtttgtggataaggttgtcgtaccttgggtcgcacgcttcaactgtggcgcgattttcactggcgcatcgcga-ttttgtctatcactgtgtactc 11151934  T
Q  224 tttaagtgtttaagctcatttttgaagggggaa 256  Q
    ||||||||||| |||||||||||||||| ||||    
T  11151933 tttaagtgtttcagctcatttttgaaggaggaa 11151901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 42288861 - 42288717
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||      
T  42288861 aagctgaaaattgtggtgcgattttcagaggcgtggcgtgattttgctggtagaatggatggtttctgttgaagcaaatcgtggcgtgattttgtgca-t 42288763  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    | |||| |||||| | ||||||||||| ||||||||||||||||||    
T  42288762 catgacacgatttcttgataaggttgttgtaccttgggtcgtacac 42288717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 58 - 251
Target Start/End: Original strand, 42362014 - 42362206
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    ||||||| ||||||||||||||||||||||||||| |||| | || || ||||  | |||||||||||||||||| ||||||| ||||||||||||||||    
T  42362014 gattttggtggcagaatggatggtttctgctgaaggcaaaacatgacgagattg-gtgcaggcgtgacgcgatttgtggataacgttgtcgtaccttggg 42362112  T
Q  157 tcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagg 251  Q
    |||||| | |||  |||||  |||||||   | |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  42362113 tcgtactcatcaatcgtgacacgattttgggtagcgcggcgcgatttt-gtctgtcactgtgtactatttaagtgtttcagctcatttttgaagg 42362206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 14202920 - 14202827
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttg 112  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14202920 aagctgaaaatcgtggggcgattttcagaggtgtggcgcgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttg 14202827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 14635272 - 14635189
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtgg 102  Q
    ||||| ||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  14635272 aagctaaaaattgtggcgcgattttcagaggcgtggcacgattttgctggcagaatggatggtttatgctgaagcaaatcgtgg 14635189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 14202815 - 14202721
Alignment:
Q  156 gtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagg 251  Q
    ||||||| ||||| |||||  ||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  14202815 gtcgtacgcttcaaccgtggcgcgattttcactggcgcagtgcgatttt-gtctgtcactgtgtactacttaagtgtttcagctcatttttgaagg 14202721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 11690213 - 11690348
Alignment:
Q  109 tttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtc 208  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| | |||  |||||  |||||||   ||||| || | ||  ||||||    
T  11690213 tttgtgcaggcgtgacacgatttattgataaggttgtcgtaccttggatcgtactcatcaatcgtgacacgattttgggtggcgtggtgcga--tttgtc 11690310  T
Q  209 tgtcactgtgtactatttaagtgtttaagctcattttt 246  Q
    ||||| |||||||||||||||||||| | |||||||||    
T  11690311 tgtcattgtgtactatttaagtgtttcaactcattttt 11690348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 7815774 - 7815678
Alignment:
Q  66 tggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtac 162  Q
    ||||| ||||| |||||||| ||||   |||||||| | ||||||| || ||||||||| |||||| | |||||||  || ||||||||||||||||    
T  7815774 tggcaaaatggttggtttctcctgactaaaatcgtgacacgattttaggtaggcgtgacacgatttttagataaggcagttgtaccttgggtcgtac 7815678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 16568665 - 16568909
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||| |||||||| ||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||      
T  16568665 aagctgaaaatcgtggcgtgattttcaaaggggtggcgcgattttgctgccagaatagatggtttctgctgaagcaaatcgtggcgcgattttgtgcaac 16568764  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||| | |||  |||||||||   ||| ||||| ||||||| ||||| ||||||    
T  16568765 cgtgacgcaatttgtggataaggttgtcgtaccttgggtcgtacgcttcaactgtggcgcgattttcctaggcacggcgcgatttttatctgtaactgtg 16568864  T
Q  219 tactatttaagtgtttaagctcatttttgaagggggaagagagag 263  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||    
T  16568865 tactatttaagtgtttcagctcatttttgaaggaggatgagagag 16568909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 16566830 - 16567072
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||  | ||||||||||||||||||||||||||||||||||||||||||| |||      
T  16566830 aagctgaaaatcgtggcacgattttcagaggcgtggcacgattttgc--gaagaatggatggtttctgctgaagcaaatcgtggcgcgattttgtgcaac 16566927  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtg 218  Q
    | ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||  || ||||||   |||| |||| ||||||||||||||||||||    
T  16566928 catgacgcgatttgtggatgaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgcaattttcctaggcgtggcgcgatttttgtctgtcactgtg 16567027  T
Q  219 tactatttaagtgtttaagctcatttttgaagggggaagagagag 263  Q
    ||||||||||||| || |||||||||||||| | ||| |||||||    
T  16567028 tactatttaagtgcttcagctcatttttgaatgaggaggagagag 16567072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 2973693 - 2973549
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||| ||||||||||||||||||||| ||| |    
T  2973693 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgttggcatagtggatggtttctactgacgcaaatcgtggcgcgattttgtgca-g 2973595  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||||| |||||| |||||||||| || ||||||||||||||||||    
T  2973594 cgtgacacgatttctggataaggtcgttgtaccttgggtcgtacac 2973549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 58 - 263
Target Start/End: Complemental strand, 28137916 - 28137712
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaagcaaa-tcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    ||||||| |||||||| | |||||||||||||||| ||| | ||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  28137916 gattttgttggcagaacgtatggtttctgctgaaggaaaattgtggcacgattt-gtgcaggcgtgatgcgatttatggataaggttgtcgtaccttggg 28137818  T
Q  157 tcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagggggaa 256  Q
    |||||| | |||  |||||  |||||||   ||||||| ||  | ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||     
T  28137817 tcgtactcatcaatcgtgacacgattttggatggcgcgacgcta-ttttgtcagtcactgtgtactatttaagtgtttcagctcatttttgaagggagag 28137719  T
Q  257 gagagag 263  Q
    |||||||    
T  28137718 gagagag 28137712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 5043083 - 5043217
Alignment:
Q  59 attttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggt 157  Q
    |||||| |||||||| | |||||||||||||||| |||||||||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |    
T  5043083 attttgttggcagaacgtatggtttctgctgaaggcaaatcgtggtgcgattt-gtgcaggcgtgacgcgatttgtggataaggttatcgtaccttggat 5043181  T
Q  158 cgtacacttcatccgtgatgcgattttcactggcgc 193  Q
    ||||| ||||| || ||  ||||||||  |||||||    
T  5043182 cgtacgcttcaaccatggcgcgattttggctggcgc 5043217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 31937140 - 31937002
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgc-tggcagaatggatggtttctgctgaa-gcaaatcgtggcgcgattttgggcaggcgtg 122  Q
    |||||||||||||||||||  ||| |||| || |||||||| |||||||||| || |||| ||||||| |||||||| |||||||||| |  | ||||||    
T  31937140 aaaatcgtggcgcgattttgggagccgtgacgcgattttgcttggcagaatgaat-gtttttgctgaaggcaaatcgcggcgcgatttagtactggcgtg 31937042  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtac 162  Q
     |||||||| |||||||||  || ||| ||| ||||||||    
T  31937041 gcgcgatttgtggataaggacgttgtatcttaggtcgtac 31937002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 5870009 - 5870152
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  5870009 aagctgaaaatcgtggcgcgattttcagaggcgtggcacgattttgctggcagaatggatggtttctgcttaagcaaatcgtggtgcgattttgtgcagg 5870108  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtac 162  Q
    |||||| |||||| |||||||| |||||| ||||||||||||||    
T  5870109 cgtgacacgatttgtggataagtttgtcgaaccttgggtcgtac 5870152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 378794 - 378938
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||| ||| |||||||||| ||| |    
T  378794 aagctgagaatcgtggcgcgattttcagaggcgtggcgcgattttattggcagaatggatggtttctactgaagcaaattgtgacgcgattttgtgca-g 378892  T
Q  119 cgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    |||||| |||||| ||||||||| ||| ||| ||||||||||||||    
T  378893 cgtgacacgatttgtggataaggctgttgtatcttgggtcgtacac 378938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 41963862 - 41964016
Alignment:
Q  50 cgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgta 149  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||| |||||| |||||||||| || |||    
T  41963862 cgtggcgcgattttgctggcagaatggatggtttctgttgaagcaaatcgtggcgcgattttgtgca-ccgtgacacgatttgtggataaggtcgttgta 41963960  T
Q  150 ccttgggtcgtacac-ttcatccgtgatgcgattttcactggcgcggcgtgatttt 204  Q
    |||||||||||||||  | | |||||  |||||||   ||||||||||||||||||    
T  41963961 ccttgggtcgtacacaatgaaccgtggcgcgatttcggctggcgcggcgtgatttt 41964016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 12072807 - 12072928
Alignment:
Q  19 aagctgaaaatcgtggcgcgattttcagaggcgtggcgtgattttgctggcagaatggatggtttctgctgaagcaaatcgtggcgcgattttgggcagg 118  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||| ||| |    
T  12072807 aagcttaaaatcgtggcgcgattttcagaggcatggcgcgattttgctggcagaatggatggtttctgctgaagcaaattgttgcacgattttgtgca-g 12072905  T
Q  119 cgtgacgcgatttatggataagg 141  Q
    |||||| |||||| | |||||||    
T  12072906 cgtgacacgatttctagataagg 12072928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 46702974 - 46703060
Alignment:
Q  78 tggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtacac 164  Q
    ||||||||||||||| |||||||||||||||||  | |||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  46702974 tggtttctgctgaaggcaaatcgtggcgcgattg-gtgcaggcgtgacgcgatttgtggataaggtcgttgtaccttgggtcgtacac 46703060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 5871605 - 5871674
Alignment:
Q  181 ttttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagg 251  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  5871605 ttttcactggcacggcgcgatttt-gtctgtcactgtgtactatttaagtgtttcagctcatttttgaagg 5871674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 47038772 - 47038723
Alignment:
Q  202 ttttgtctgtcactgtgtactatttaagtgtttaagctcatttttgaagg 251  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  47038772 ttttgtctgtcattgtgtactatttaagtgtttcagctcatttttgaagg 47038723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 13009784 - 13009733
Alignment:
Q  212 cactgtgtactatttaagtgtttaagctcatttttgaagggggaagagagag 263  Q
    |||| |||||||||||||||||| |||||||||||||||||||  |||||||    
T  13009784 cactatgtactatttaagtgtttcagctcatttttgaagggggtggagagag 13009733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 47038909 - 47038816
Alignment:
Q  59 attttgctggcagaatggatggtttctgctgaagc--aaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtacc 151  Q
    |||||| |||||||| | |||||| |||||||||   ||||||||||||||||| | |||||||||||  ||||| ||| ||||| |||||||||    
T  47038909 attttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgattt-gtgcaggcgtgacaagatttctgggtaaggctgtcgtacc 47038816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 26700018 - 26699990
Alignment:
Q  202 ttttgtctgtcactgtgtactatttaagt 230  Q
    |||||||||||||||||||||||||||||    
T  26700018 ttttgtctgtcactgtgtactatttaagt 26699990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 6598634 - 6598823
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    ||||||| ||||||||||| |||||| |||||||| |||||||||||||||||  | ||||| |||||||||||| |||||||||||||||||||||| |    
T  6598634 gattttggtggcagaatgggtggtttatgctgaaggcaaatcgtggcgcgattg-gtgcaggtgtgacgcgatttgtggataaggttgtcgtaccttgcg 6598732  T
Q  157 tcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttga 248  Q
     | ||| ||||| |||||  ||||||||| ||||||||||| || |||||| ||||||| |||||||||||||||||| |||||||||||||    
T  6598733 ccatacgcttcaaccgtggcgcgattttctctggcgcggcgcga-ttttgtttgtcactatgtactatttaagtgtttcagctcatttttga 6598823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 6674087 - 6674276
Alignment:
Q  58 gattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 156  Q
    ||||||| ||||||||||| |||||| |||||||| |||||||||||||||||  | ||||| |||||||||||| |||||||||||||||||||||| |    
T  6674087 gattttggtggcagaatgggtggtttatgctgaaggcaaatcgtggcgcgattg-gtgcaggtgtgacgcgatttgtggataaggttgtcgtaccttgcg 6674185  T
Q  157 tcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgtttaagctcatttttga 248  Q
     | ||| ||||| |||||  ||||||||| ||||||||||| || |||||| ||||||| |||||||||||||||||| |||||||||||||    
T  6674186 ccatacgcttcaaccgtggcgcgattttctctggcgcggcgcga-ttttgtttgtcactatgtactatttaagtgtttcagctcatttttga 6674276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 41365280 - 41365164
Alignment:
Q  133 tggataaggttgtcgtaccttgggtcgtacacttcatccgtgatgcgattttcactggcgcggcgtgatttttgtctgtcactgtgtactatttaagtgt 232  Q
    |||||||||||||||||||||||||| ||| ||||| |||||  ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||    
T  41365280 tggataaggttgtcgtaccttgggtcatacgcttcaaccgtggcgcgattttctctggcgcggcgcgatttt-gtctgtcactgtgtactatttaagtgt 41365182  T
Q  233 ttaagctcatttttgaag 250  Q
    || |||||||||||||||    
T  41365181 ttcagctcatttttgaag 41365164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 1292946 - 1292855
Alignment:
Q  72 aatggatggtttctgctgaagcaaa-tcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtac 162  Q
    ||||||||||||||||||||| ||| || ||||||||||| |   ||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  1292946 aatggatggtttctgctgaaggaaaatcatggcgcgatttcgtataggcgtgacacgatttctggataaagttgtcgtaccttgggtcgtac 1292855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 19751927 - 19752065
Alignment:
Q  25 aaaatcgtggcgcgattttcagaggcgtggcgtgattttgct-ggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtg 122  Q
    ||||||||||| |||||||  ||| |||| || ||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||| |  | ||||||    
T  19751927 aaaatcgtggcacgattttgggagccgtgacgcgattttgcttggcagaatggatgtttt-tgctgaaggcaaatcgcggcgcgatttagtactggcgtg 19752025  T
Q  123 acgcgatttatggataaggttgtcgtaccttgggtcgtac 162  Q
     |||||||  ||||||||| ||| ||||||||||||||||    
T  19752026 gcgcgattggtggataaggatgttgtaccttgggtcgtac 19752065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 5990183 - 5990248
Alignment:
Q  92 gcaaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttgggt 157  Q
    |||||||||| | ||||||  |||||||||||| |||||||||||||||||||| |||| ||||||    
T  5990183 gcaaatcgtgacacgatttgtggcaggcgtgacacgatttatggataaggttgttgtacattgggt 5990248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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