View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9320_low_15 (Length: 278)
Name: NF9320_low_15
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 35466179 - 35465912
Alignment:
| Q |
1 |
ttgtaagcttttaaccaccaccaagcatggagcttgatgagatcaagaagctaatcctgagagacttatttattgcnnnnnnnttctacaattgcactct |
100 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
35466179 |
ttgtaagcttttaactaccaccatgaatggagcttgatgcgatcaagaagctaatcctgagagacttacttattgcaaaaaaattctacagttgcactct |
35466080 |
T |
|
| Q |
101 |
ttccaaatgacccagatgcagtccaaccaaatcatgtgaaagttgaaccgaatatccttcatgaaagatatctgcgccaccaaactgaagagcttgagaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
35466079 |
ttccaaatgacccagatgtagtccaaccaaatcatgtgaaagttgaaccaaatatccttcatgaaagatatatgtgccaccaaactgaagagcttgagaa |
35465980 |
T |
|
| Q |
201 |
ccaatatcaggtggatgaacggtagaaacacccaaccaaccaagaactagccgccaagtaccaccaaa |
268 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35465979 |
ccaatatcatgtggatgaacggtagaaacacccagccaaccaagaactagccgccaagtaccaccaaa |
35465912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 13059066 - 13059206
Alignment:
| Q |
108 |
tgacccagatgcagtccaaccaaatcatgtgaaagttgaaccgaatatccttcatgaaagatatctgcgccaccaaactgaagagcttgagaaccaatat |
207 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| | || ||||||||| || |||| ||||| ||||| ||||||||| |||| | ||||| |||| |
|
|
| T |
13059066 |
tgacccagatgcataccaaccaaatcacgtgaaagcttaatcgaatatccctcctgaa-gatatgtgcgcaaccaaactgtagagtgtaagaactgatat |
13059164 |
T |
|
| Q |
208 |
caggtggatgaacggtagaaacacccaaccaaccaagaacta |
249 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13059165 |
cagctagatgaacggtagaaacacccaaccaactaagaacta |
13059206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University