View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9320_low_2 (Length: 445)
Name: NF9320_low_2
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 36396970 - 36396544
Alignment:
| Q |
17 |
catgtagcactctagcacctatcattctgaaaccttggagctaatctgatacaactcttagactacttacatgtaatatcctgctctgttaacactactt |
116 |
Q |
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| T |
36396970 |
catgtagcactctagcacctatcattctgaaaccttgaagctaatctgatacaactcttagactacttacatgtaatatcctgctctgttaacactactt |
36396871 |
T |
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| Q |
117 |
gatcccattcactagctttgttttcatgggcaccccattcactagcttatacaatgcaggtagttctattaactccccctcctcctcatcatcatcagaa |
216 |
Q |
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| T |
36396870 |
gatcccattcactagctttgttttcataggcaccccattcactagcttatacaatgcaggcagttctattaa------ctcctcctcatcatcatcagaa |
36396777 |
T |
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| Q |
217 |
atccaaccatggcaaggtctacgcttcttgtgacaaagcttcccaataggttgtgaggactttctctgaggaatttctgcaagagggatgacaatagtat |
316 |
Q |
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| T |
36396776 |
atccaaccatggcaaggtctacgcttcttgtgacaaagcttcccaataggttgtgaggactttgtctgaggaatttctgcaagagggatgacaatagtat |
36396677 |
T |
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| Q |
317 |
acaagatgctcaagttatgcttcaaaattaaataaaattaattaacaaggataggaag----ttaattaccatatccattgtctgctgatacagtctcta |
412 |
Q |
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| T |
36396676 |
acaagatgctcaagttatgcttcaaaattaaataaaattaattaacaaggataagaagttaattaattaccatatccattgtctgctgatacagtctcta |
36396577 |
T |
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| Q |
413 |
taatagccttgctgggaacttggttgttaattt |
445 |
Q |
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| T |
36396576 |
taatagccttgctgggaacttggttgttaattt |
36396544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 2943855 - 2944024
Alignment:
| Q |
276 |
ctttctctgaggaatttctgcaagagggatgacaatagtatacaagatgctcaagttatgcttcaaaattaaataaaattaattaacaaggataggaagt |
375 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2943855 |
ctttgtctgaggaatttctgcaagagggatgacagtagtatacaagatgctcaagttatgcttcaaaattaaataaaattaattaacaaggataagaagt |
2943954 |
T |
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| Q |
376 |
taattaccatatccattgtctgctgatacagtctctataatagccttgctgggaacttggttgttaattt |
445 |
Q |
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| T |
2943955 |
taattaccatatccattgtctgctgatacagtctctataatagccttgatgggaacttggttgttaattt |
2944024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 2943749 - 2943857
Alignment:
| Q |
137 |
ttttcatgggcaccccattcactagcttatacaatgcaggtagttctattaactccccctcctcctcatcatcatcagaaatccaaccatggcaaggtct |
236 |
Q |
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| T |
2943749 |
ttttcatgggcaccccattcactagcttatacaatgcaggtagttctattaactccccctcttcctcatcatcatcagatatccaaccatggcaaggtct |
2943848 |
T |
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| Q |
237 |
acgcttctt |
245 |
Q |
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|||| |||| |
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| T |
2943849 |
acgcctctt |
2943857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 2943698 - 2943726
Alignment:
| Q |
17 |
catgtagcactctagcacctatcattctg |
45 |
Q |
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| T |
2943698 |
catgtagcactctagcacctatcattctg |
2943726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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