View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9320_low_23 (Length: 238)
Name: NF9320_low_23
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13609129 - 13608907
Alignment:
| Q |
1 |
aatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgcatcccaactatattgccaggtaaagtt |
100 |
Q |
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| T |
13609129 |
aatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgcatcccaactatattgccaggtaaagtt |
13609030 |
T |
|
| Q |
101 |
gaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaattccaaatcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609029 |
gaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaattccaaatcatc |
13608930 |
T |
|
| Q |
201 |
acatgacaaccacaaacaaaaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
13608929 |
acatgacaaccacaaacaaaaac |
13608907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31245078 - 31244857
Alignment:
| Q |
1 |
aatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgcatcccaactatattgccaggtaaagtt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||| ||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
31245078 |
aatccctaccactcgaacatcatcatctgagtccataatcaaaagcttttctaattcttcgactcgtgagtgcatcccaactatatcgttaggtaaagtt |
31244979 |
T |
|
| Q |
101 |
gaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaattccaaatcatc |
200 |
Q |
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| T |
31244978 |
gaagatttgtgactcaataagcatgttacctctttaataatttttccaatctctgcatattgtggcctaaaagaccagaggatagaaataccaaatcatc |
31244879 |
T |
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| Q |
201 |
acatgacaaccacaaacaaaaa |
222 |
Q |
| |
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||| |||||| |||||||||| |
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| T |
31244878 |
acacaacaaccccaaacaaaaa |
31244857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 6472633 - 6472812
Alignment:
| Q |
39 |
tcagaaggttttctaattcttccactcgtgagtgcatcccaactatattgccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaat |
138 |
Q |
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|||||| ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||| | ||| ||||||||| |
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| T |
6472633 |
tcagaaagttttgtaattcttccacttgtgagtgcatcccaactatatcaccagttaaagtttcagtcttatttcccaataagcttcttacctttttaat |
6472732 |
T |
|
| Q |
139 |
aatttttccaatctctgcatattctggcctagaagaccagaggatagaaattccaaatcatcacatgacaaccacaaaca |
218 |
Q |
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||||||| ||||||| ||||||| || |||| |||||||||| ||||||||||||||||||||||||| |||||| |||| |
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| T |
6472733 |
aattttttcaatctccgcatattgtgacctaaaagaccagagaatagaaattccaaatcatcacatgaaaaccacgaaca |
6472812 |
T |
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