View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9320_low_4 (Length: 381)
Name: NF9320_low_4
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 49394485 - 49394810
Alignment:
| Q |
1 |
tcatcaaaatcacttccattacactcaaatcgaagaaatcaacaatcaaacaaaaacgaaatgaaattgagaatgcagataaaaagatagaatcatcacc |
100 |
Q |
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| T |
49394485 |
tcatcaaaatcacttccattacactcaaatcgaagaaatcaacaatcaaacaaaaacgaaatgaaattgagaatgcagataaaaagatagaatcatcacc |
49394584 |
T |
|
| Q |
101 |
ttcatcagcaccgacggaagtccattccggcgacggatcagagtgcaactgcgacgacccatcgttagctcggccgtacctttgttccattgtacggacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49394585 |
ttcatcagcaccgacggaagtccattccggcgacggatcagagtgcaactgcgacgacccatcgttagctcggccgtaccttggttccattgtacggacg |
49394684 |
T |
|
| Q |
201 |
aaacgaagggtaaaaatggaacaatctgaaaaagtttggaaccctcaaaacagagaatggatggttccgatgaaaagcgtgtgaatgaagaaactagagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49394685 |
aaacgaagggtaaaaatggaacaatctgaaaaagtttggaaccctcaaaacagagaatggatggttccgatgaaaagcgtgtgaatgaagaaactagagt |
49394784 |
T |
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| Q |
301 |
gagaaactggttcggatttctaggtt |
326 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
49394785 |
gagaaactggttcggatttctgggtt |
49394810 |
T |
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