View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9320_low_45 (Length: 201)
Name: NF9320_low_45
Description: NF9320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9320_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 26552326 - 26552458
Alignment:
| Q |
15 |
agattaaagttttaggtttaaatcaacaaggcagttttagtagaaagtactgaatggctctgaagttactgcagtgtttccctcattaggtcaacaacaa |
114 |
Q |
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| T |
26552326 |
agattaaagttttaggtttaaatcaacaaggcagttttagtagaaagtactaaatggctctgaagttactgcagtgtttccctcattaggtcaacaacaa |
26552425 |
T |
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| Q |
115 |
aactttgattatgacagattctgctaacaaaag |
147 |
Q |
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| T |
26552426 |
aactttgattatgacagattctgctcacaaaag |
26552458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 26549362 - 26549488
Alignment:
| Q |
22 |
agttttaggtttaaatcaacaaggcagttttagtagaaagtactgaatggctctgaagttactgcagtgtttccctcattaggtcaacaacaaaactttg |
121 |
Q |
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| T |
26549362 |
agttttaggttcaaatcaactagccaccttgagtagtaaacaataaatggctctggagttgctgcagagtttccctcgttaggtcaactacaaagcttta |
26549461 |
T |
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| Q |
122 |
attat-gacagattctgctaacaaaag |
147 |
Q |
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| T |
26549462 |
attataaaaagattctgctcacaaaag |
26549488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 29684744 - 29684781
Alignment:
| Q |
91 |
tttccctcattaggtcaacaacaaaactttgattatga |
128 |
Q |
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| T |
29684744 |
tttccctcattagatcaagaacaaaactttgattatga |
29684781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 5157458 - 5157523
Alignment:
| Q |
60 |
agtactgaatggctctgaagttactgcagtgtttccctcattaggtcaacaacaaaactttgatta |
125 |
Q |
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| T |
5157458 |
agtacttaatggcgctgaagttactgttatgtttctctccttagatcaagaacaaaactttgatta |
5157523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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