View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_high_1 (Length: 625)

Name: NF9321_high_1
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_high_1
NF9321_high_1
[»] chr7 (6 HSPs)
chr7 (4-144)||(40998349-40998489)
chr7 (157-261)||(41731480-41731584)
chr7 (139-261)||(40636318-40636442)
chr7 (32-96)||(22688946-22689010)
chr7 (571-603)||(8318826-8318858)
chr7 (31-98)||(35875130-35875197)
[»] chr2 (10 HSPs)
chr2 (139-284)||(4409466-4409612)
chr2 (5-96)||(18684409-18684500)
chr2 (5-99)||(32859829-32859924)
chr2 (28-99)||(40347938-40348009)
chr2 (140-246)||(40354350-40354457)
chr2 (139-231)||(3725632-3725725)
chr2 (158-262)||(5748036-5748140)
chr2 (164-258)||(38339499-38339593)
chr2 (29-96)||(13538443-13538510)
chr2 (26-96)||(43745681-43745751)
[»] chr8 (12 HSPs)
chr8 (113-254)||(33729029-33729171)
chr8 (5-96)||(31265044-31265135)
chr8 (5-96)||(25279975-25280065)
chr8 (149-252)||(43563891-43563994)
chr8 (163-261)||(13794738-13794836)
chr8 (5-98)||(37564300-37564393)
chr8 (29-99)||(1502662-1502732)
chr8 (47-96)||(33285935-33285984)
chr8 (5-77)||(39851971-39852043)
chr8 (30-96)||(9852080-9852147)
chr8 (5-96)||(41385312-41385403)
chr8 (48-96)||(40914582-40914630)
[»] chr4 (5 HSPs)
chr4 (139-253)||(25377083-25377197)
chr4 (113-255)||(38068837-38068981)
chr4 (28-99)||(2063519-2063590)
chr4 (3-99)||(24546674-24546770)
chr4 (163-258)||(39262574-39262669)
[»] chr1 (17 HSPs)
chr1 (161-257)||(7220049-7220145)
chr1 (157-236)||(16446917-16446996)
chr1 (139-250)||(44294934-44295047)
chr1 (135-259)||(1037904-1038028)
chr1 (135-259)||(1044810-1044934)
chr1 (139-259)||(10820015-10820137)
chr1 (142-259)||(42451486-42451604)
chr1 (163-284)||(35042142-35042262)
chr1 (5-99)||(46592437-46592531)
chr1 (138-219)||(11421506-11421588)
chr1 (29-98)||(5423738-5423807)
chr1 (27-99)||(5250891-5250963)
chr1 (168-259)||(36019088-36019177)
chr1 (48-96)||(44584061-44584109)
chr1 (5-60)||(21304324-21304379)
chr1 (580-608)||(33229721-33229749)
chr1 (30-82)||(39912200-39912252)
[»] chr6 (4 HSPs)
chr6 (161-280)||(20394652-20394771)
chr6 (171-257)||(6009810-6009895)
chr6 (150-220)||(24150597-24150667)
chr6 (27-99)||(25028688-25028760)
[»] chr3 (12 HSPs)
chr3 (162-249)||(29213226-29213313)
chr3 (158-237)||(36936326-36936405)
chr3 (140-253)||(25737858-25737972)
chr3 (139-257)||(954821-954940)
chr3 (5-96)||(43804016-43804107)
chr3 (5-86)||(31625308-31625389)
chr3 (171-253)||(34104343-34104423)
chr3 (135-253)||(46752906-46753025)
chr3 (5-99)||(54290746-54290839)
chr3 (223-284)||(55118677-55118738)
chr3 (51-98)||(51039800-51039847)
chr3 (52-93)||(37822604-37822645)
[»] chr5 (8 HSPs)
chr5 (170-258)||(1923855-1923943)
chr5 (29-99)||(25437866-25437936)
chr5 (151-249)||(6923425-6923523)
chr5 (136-201)||(31547284-31547350)
chr5 (154-283)||(38836131-38836261)
chr5 (150-255)||(36959171-36959277)
chr5 (47-96)||(42877291-42877340)
chr5 (29-81)||(24041015-24041067)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 40998349 - 40998489
Alignment:
Q  4 aaaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactgggct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||    
T  40998349 aaaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaactttttatgaaaatttgtgtatttaatacattaaaaattaaactgggct 40998448  T
Q  104 tnnnnnnnnggtcatattaacaagtgtcccgcggacactag 144  Q
    |        ||||||||||||||||| ||||||||||||||    
T  40998449 taaaaaaagggtcatattaacaagtgccccgcggacactag 40998489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 41731480 - 41731584
Alignment:
Q  157 aaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactag 256  Q
    |||||||||||||| || ||||||| |||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||| |||||||| ||    
T  41731480 aaagagaaagtttttaaattaaaaaaacactttattgacttttaagggattgacaacacaattttcaatgcaatacatactatatttggttcttaacgag 41731579  T
Q  257 tgccc 261  Q
    |||||    
T  41731580 tgccc 41731584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 40636318 - 40636442
Alignment:
Q  139 cactagttaagaaatc-agaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaataca-tac 236  Q
    |||||||||||||| | | ||| ||||| |||||| || | |||||||||||||||||||||||| |||| | || |||||||| |||| |||| | ||     
T  40636318 cactagttaagaaaaccataaaaagaaaattttaatttaagaaagacactttattgacttttaagggattgaaaacacaattttcaatgtaatagattat 40636417  T
Q  237 tatatttgcttcttaactagtgccc 261  Q
    |||||||||||||||||||||||||    
T  40636418 tatatttgcttcttaactagtgccc 40636442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 22688946 - 22689010
Alignment:
Q  32 tctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||||| |||| |||||||| ||||||||| ||||| |||||||||| ||||||||||||||    
T  22688946 tctttaagaatctaaaatagtaattttttatgacaacttgtgtatttaatgcattaaaaattgaa 22689010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 603
Target Start/End: Original strand, 8318826 - 8318858
Alignment:
Q  571 taaataagtgtctctgtgagcttaactcagttg 603  Q
    |||||| ||||||||||||||||||||||||||    
T  8318826 taaataggtgtctctgtgagcttaactcagttg 8318858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 35875197 - 35875130
Alignment:
Q  31 ctctttaagagtctagaatagtaaatttttatgaaaacttatgtattt-aatacattaaaaattgaact 98  Q
    ||||||||||||||  | |||||| |||||||||||| |||| ||||| |||||||||||| |||||||    
T  35875197 ctctttaagagtctcaagtagtaactttttatgaaaatttat-tatttcaatacattaaaagttgaact 35875130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 139 - 284
Target Start/End: Complemental strand, 4409612 - 4409466
Alignment:
Q  139 cactagttaagaaatc-agaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatact 237  Q
    |||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||| |    
T  4409612 cactagttaagaaacccataaagagaaagttttaaattaaaaaagacactttattgacttttaagggattgacaacacaattttcaatgcaatacatatt 4409513  T
Q  238 atatttgcttcttaactagtgccctagggcactaattaacattaccc 284  Q
    |||||||||| |||||| |||| || ||| |||  |||||| |||||    
T  4409512 atatttgctttttaactggtgctctggggtactggttaacaataccc 4409466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 18684500 - 18684409
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||| ||||||||| || || ||||||||||||| |||||||| ||| |||||||||||| || |||||||||||||||  ||||||||    
T  18684500 aaatgttaacgagtgctccctggacactctttaagagcctagaataataactttttatgaaaatttgtgtatttaatacattggaaattgaa 18684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 32859924 - 32859829
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaattttt-atgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||| ||||||| | |||||||||||||||||| | ||||||||||  ||||| |||||||||| |||||||||||||||  |||||||||||    
T  32859924 aaatgttaacgagtgttcccggggcactctttaagattttagaatagtatcttttttatgaaaacttgtgtatttaatacattggaaattgaactg 32859829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 40347938 - 40348009
Alignment:
Q  28 gcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||| ||||||||  || |||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  40347938 gcactatttaagagcttaaaatagtaattttttatgaaaatttgtgtatttaatacattaaaaattgaactg 40348009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 40354457 - 40354350
Alignment:
Q  140 actagttaagaaatcagaa-agagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatacta 238  Q
    ||||||||||||| || || | ||||||||||||||| ||||| |||||||  ||||||||||  ||||||||| |||||| | || ||| |||||||||    
T  40354457 actagttaagaaaacaaaagaaagaaagttttaaattgaaaaatacactttgatgacttttaaaggattaacaagacaattgtcaacgcagtacatacta 40354358  T
Q  239 tatttgct 246  Q
    ||||||||    
T  40354357 tatttgct 40354350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 3725725 - 3725632
Alignment:
Q  139 cactagttaagaaa-tcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaata 231  Q
    |||||||||||||| ||| ||||||||| ||||||||| ||||||| |||| ||||||||||||| |||| |||| | |||||| ||| |||||    
T  3725725 cactagttaagaaaatcataaagagaaaattttaaattaaaaaagatacttcattgacttttaagggattgacaacataattttcaatacaata 3725632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 5748140 - 5748036
Alignment:
Q  158 aagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagt 257  Q
    |||||||||||||||||| ||||| |||||||||| | ||||||| |||| |||  | |||||  ||| ||||| || ||||||||  ||||||||| ||    
T  5748140 aagagaaagttttaaattaaaaaatacactttattaatttttaagagattgacagcataatttctaatacaatatattctatatttagttcttaactggt 5748041  T
Q  258 gccct 262  Q
    |||||    
T  5748040 gccct 5748036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 38339593 - 38339499
Alignment:
Q  164 aagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtg 258  Q
    |||||||||||| ||||| ||| ||| |||||||||||  |||| |||| | |||||| ||  ||||| |||||||||| |||||||||| ||||    
T  38339593 aagttttaaattaaaaaatacattttgttgacttttaaaggattgacaacataatttttaacacaatatatactatattagcttcttaaccagtg 38339499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 13538510 - 13538443
Alignment:
Q  29 cactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||||||| ||||  |||||||| |||||||||||| ||||||||| ||| ||||  ||||||||    
T  13538510 cactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaa 13538443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 43745751 - 43745681
Alignment:
Q  26 gggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||||||||||||| || ||||||||  |||||||||||| | || ||| ||| |||| |||||||||    
T  43745751 gggcactctttaagagtttaaaatagtaaggttttatgaaaacgtgtgcattcaatgcattgaaaattgaa 43745681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 113 - 254
Target Start/End: Complemental strand, 33729171 - 33729029
Alignment:
Q  113 ggtcatattaacaagtgtcccgcggacactagttaagaaatc-agaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaaca 211  Q
    |||||||||||| |||| |||| || |||||||||||||| | | | ||||||| ||||||||| ||||||||||||||||||||||||||  ||| |||    
T  33729171 ggtcatattaaccagtgccccgggggcactagttaagaaaaccacacagagaaaattttaaattaaaaaagacactttattgacttttaaggaattgaca 33729072  T
Q  212 atacaattttgaatgcaatacatactatatttgcttcttaact 254  Q
    | |||||||| |||  ||||||||||||||||| |||||||||    
T  33729071 acacaattttcaatataatacatactatatttggttcttaact 33729029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 31265135 - 31265044
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||  ||||||||    
T  31265135 aaatgttaacgagtgctcccggggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaa 31265044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 25280065 - 25279975
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||| ||||||||  || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  25280065 aaatgttaacgagtgcc-cctgggcactctttaagagcctaaaatagtaaatttttatgaaaacttatgtatttaatacattggaaattgaa 25279975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 43563891 - 43563994
Alignment:
Q  149 gaaatcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttc 248  Q
    ||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||  | |||| |||| |||||||  ||| || |||||||||||||||||||    
T  43563891 gaaatcaaaaaaagaaagttttaaattgaaaaatacactttattgatttttgtgggattgacaacacaatttctaatacagtacatactatatttgcttc 43563990  T
Q  249 ttaa 252  Q
    ||||    
T  43563991 ttaa 43563994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 13794738 - 13794836
Alignment:
Q  163 aaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtgccc 261  Q
    ||||||||||||  |||||||| |||||||||||||||||  ||| |||| |||||||  ||||  || ||||||||||||| ||||||||||||||||    
T  13794738 aaagttttaaataaaaaaagactctttattgacttttaagacattgacaacacaatttccaatgtgatgcatactatatttggttcttaactagtgccc 13794836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 37564300 - 37564393
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaact 98  Q
    ||||||| ||||||||   ||| ||| ||||||||||  |||||||||||  |||||||||||||| |||||||||||||||  ||||||||||    
T  37564300 aaatgttaacgagtgcccacggagcattctttaagagcttagaatagtaaccttttatgaaaacttgtgtatttaatacattggaaattgaact 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 1502662 - 1502732
Alignment:
Q  29 cactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||||||||||||| | |||||| |||||||||||| ||  ||||||||| |||| ||||||||||||    
T  1502662 cactctttaagagtctaaagtagtaattttttatgaaaatttgcgtatttaatgcattgaaaattgaactg 1502732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 33285935 - 33285984
Alignment:
Q  47 aatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||||||||||||||||| || ||||||||||||||  |||||||||    
T  33285935 aatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaa 33285984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 39851971 - 39852043
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatt 77  Q
    ||||||| |||||||||  |||||||||||||||| || || | |||||| |||||||||||| || ||||||    
T  39851971 aaatgttaacgagtgctttcggggcactctttaagggtttaaagtagtaactttttatgaaaagttgtgtatt 39852043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 9852080 - 9852147
Alignment:
Q  30 actctttaagagtctagaatagtaaatttttatgaaaact-tatgtatttaatacattaaaaattgaa 96  Q
    ||||||||| ||| || ||||||||| ||||||||||| | |||||||||||  ||||||||||||||    
T  9852080 actctttaaaagtttaaaatagtaaaattttatgaaaaatatatgtatttaaggcattaaaaattgaa 9852147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 41385403 - 41385312
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||| ||||||||  ||||||||||||||||| ||    ||||||||| |||| |||||| || |||| | |||||||| |||||||||    
T  41385403 aaatgttaacgagtgcccccggggcactctttaagggttataaatagtaaaattttgtgaaaatttgtgtaatcaatacattgaaaattgaa 41385312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 40914582 - 40914630
Alignment:
Q  48 atagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    |||||||||||||||||||| || || ||||||| |||| |||||||||    
T  40914582 atagtaaatttttatgaaaatttgtgaatttaatgcattgaaaattgaa 40914630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 25377197 - 25377083
Alignment:
Q  139 cactagttaagaaatcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatacta 238  Q
    ||||||||||| || || | | ||||||||||||||| ||| |||| ||||||||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  25377197 cactagttaaggaaccatagaaagaaagttttaaattaaaacagacgctttattgacttttaagagattgacaacacaattttcaatgcaatacatacta 25377098  T
Q  239 tatttgcttcttaac 253  Q
    |||||| || |||||    
T  25377097 tatttggtttttaac 25377083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 38068837 - 38068981
Alignment:
Q  113 ggtcatattaacaagtgtcccgcggacactagttaagaaatc-agaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaaca 211  Q
    |||||| ||||| |||| |||  || |||||||||||||| | | ||||||||| ||||||||| ||||| |||||||||||||||||||| ||||  ||    
T  38068837 ggtcatgttaactagtgcccccggggcactagttaagaaaactataaagagaaaattttaaattaaaaaaaacactttattgacttttaagggattgcca 38068936  T
Q  212 atacaattttgaatg-caatacatactatatttgcttcttaacta 255  Q
    | |||||||| ||||  ||||||||||||||||  ||||||||||    
T  38068937 acacaattttcaatgtaaatacatactatatttagttcttaacta 38068981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 2063590 - 2063519
Alignment:
Q  28 gcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    |||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||  |||||||||||    
T  2063590 gcactctttaagagcctagaatagtaactttttatgaaaatttgtgtatttaatacattggaaattgaactg 2063519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 24546674 - 24546770
Alignment:
Q  3 gaaaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||||| ||||||||   || |||| | ||||||||  ||||||||||| |||||||||||| || |||||||||||||||  |||||||||||    
T  24546674 gaaaatgttaacgagtgccttcgaggcattttttaagagcttagaatagtaattttttatgaaaatttgtgtatttaatacattggaaattgaactg 24546770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 39262669 - 39262574
Alignment:
Q  163 aaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtg 258  Q
    ||||||||||||| ||||| |||| || || ||||||||| |||| |||| | |||||| ||  || |||||| ||||||||||||||||||||||    
T  39262669 aaagttttaaattaaaaaatacacgttgtttacttttaagggattgacaacagaattttcaacacagtacatattatatttgcttcttaactagtg 39262574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 7220145 - 7220049
Alignment:
Q  161 agaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagt 257  Q
    |||| |||||||||| |||| |||||||||||||||||||||  ||| |||| | |||||| |||||||||||||||||||||| ||||||||||||    
T  7220145 agaatgttttaaattaaaaaggacactttattgacttttaaggaattgacaacataattttcaatgcaatacatactatatttgtttcttaactagt 7220049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 16446917 - 16446996
Alignment:
Q  157 aaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatac 236  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||| ||||||||||||||    
T  16446917 aaagagaaagttttaaattgaaaaagacactttattgacttttaagggattgacaacacaaatttcaatgcaatacatac 16446996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 44295047 - 44294934
Alignment:
Q  139 cactagttaagaaatc--agaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatac 236  Q
    |||||||||||||| |  | ||||||||||||||||||| ||||||| |||||||||||||||||| |||| | || | |||||  ||||||||| ||||    
T  44295047 cactagttaagaaaaccaataaagagaaagttttaaattaaaaaagagactttattgacttttaagggattgaaaacataatttccaatgcaatatatac 44294948  T
Q  237 tatatttgcttctt 250  Q
    |||||||| |||||    
T  44294947 tatatttggttctt 44294934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 1037904 - 1038028
Alignment:
Q  135 cggacactagttaag-aaatcagaaagagaaagttttaaatttaaaaagacactttattga-cttttaagtgattaacaatacaattttgaatgcaatac 232  Q
    ||||||||||||||| ||||||  |||||||| | ||||||| |||||||||||||||| | ||||||||  ||| |||| |||||||| |||| ||||     
T  1037904 cggacactagttaaggaaatca--aagagaaaatcttaaattaaaaaagacactttattaaacttttaaggaattgacaacacaattttaaatgtaatat 1038001  T
Q  233 atactatatttgcttcttaactagtgc 259  Q
    |||||||||||| || |||||||||||    
T  1038002 atactatatttggttgttaactagtgc 1038028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 1044810 - 1044934
Alignment:
Q  135 cggacactagttaag-aaatcagaaagagaaagttttaaatttaaaaagacactttattga-cttttaagtgattaacaatacaattttgaatgcaatac 232  Q
    ||||||||||||||| ||||||  |||||||| | ||||||| |||||||||||||||| | ||||||||  ||| |||| |||||||| |||| ||||     
T  1044810 cggacactagttaaggaaatca--aagagaaaatcttaaattaaaaaagacactttattaaacttttaaggaattgacaacacaattttaaatgtaatat 1044907  T
Q  233 atactatatttgcttcttaactagtgc 259  Q
    |||||||||||| || |||||||||||    
T  1044908 atactatatttggttgttaactagtgc 1044934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 10820137 - 10820015
Alignment:
Q  139 cactagttaagaaa-tcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaataca-tac 236  Q
    |||||||||||||| ||| ||||| |||||||||| || ||||||| | |||||||||||||||  |||| | || || ||||  ||||||||||| |||    
T  10820137 cactagttaagaaaatcataaagataaagttttaatttaaaaaagagattttattgacttttaaaggattgaaaacacgatttccaatgcaatacattac 10820038  T
Q  237 tatatttgcttcttaactagtgc 259  Q
    ||||||||||||||||| |||||    
T  10820037 tatatttgcttcttaaccagtgc 10820015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 259
Target Start/End: Complemental strand, 42451604 - 42451486
Alignment:
Q  142 tagttaagaaa-tcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactata 240  Q
    ||||||||||| ||| ||||| ||| ||||||||| ||||||||| |||||| | ||||||| |||| |||| |||||||  |||  |||||||||||||    
T  42451604 tagttaagaaaatcataaagataaaattttaaattaaaaaagacattttattaatttttaagggattgacaacacaatttccaatataatacatactata 42451505  T
Q  241 tttgcttcttaactagtgc 259  Q
    |||| ||| ||||||||||    
T  42451504 tttgattcgtaactagtgc 42451486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 35042262 - 35042142
Alignment:
Q  163 aaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtgccct 262  Q
    ||||||||||| | |||| || | ||||||||||||||||  |||||||| |||||||  ||| |||| ||||||||| ||| ||||||||||||||||     
T  35042262 aaagttttaaaataaaaatgatattttattgacttttaagaaattaacaacacaatttctaatacaatccatactatacttggttcttaactagtgccc- 35042164  T
Q  263 agggcactaattaacattaccc 284  Q
     |||||||| |||| |||||||    
T  35042163 ggggcactagttaatattaccc 35042142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 46592437 - 46592531
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||| |||||||   |||| |||||||||||||| |||||||||||| ||||||||||||||| | ||||||||| |||  ||||| |||||    
T  46592437 aaatgttaacgagtgtccccggagcactctttaagagcctagaatagtaactttttatgaaaacttgtctatttaatatattggaaattaaactg 46592531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 11421506 - 11421588
Alignment:
Q  138 acactagttaagaaatcag-aaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaatt 219  Q
    ||||||||||||||| | | ||||||||||||||||||| ||||||||| ||||||||||| |||  |||| ||||| |||||    
T  11421506 acactagttaagaaaactgcaaagagaaagttttaaattaaaaaagacaatttattgacttgtaaaagattgacaatgcaatt 11421588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 5423738 - 5423807
Alignment:
Q  29 cactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaact 98  Q
    ||||||||||  ||||  ||| |||| |||||||||||||||||||||||||| |||| |||||||||||    
T  5423738 cactctttaaaggtcttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaact 5423807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 5250891 - 5250963
Alignment:
Q  27 ggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    |||||||||||||||  || |||| ||| |||||||||||| || ||||||||||||||| |||||| |||||    
T  5250891 ggcactctttaagagcataaaataataattttttatgaaaatttgtgtatttaatacattgaaaattaaactg 5250963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 36019088 - 36019177
Alignment:
Q  168 tttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtgc 259  Q
    |||||||| ||||||||| |||||| ||||  |||  ||| |||| |||||||  ||| ||||||||| |||||||||||||||||||||||    
T  36019088 tttaaattaaaaaagacattttattaacttacaag--attgacaacacaatttccaatacaatacatattatatttgcttcttaactagtgc 36019177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 44584061 - 44584109
Alignment:
Q  48 atagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||| ||||||||||||||| || |||||||||||| |||||||||    
T  44584061 atagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaa 44584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 21304324 - 21304379
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaattttt 60  Q
    ||||||| ||||||||  ||| | |||||||||||||||||||||||||| |||||    
T  21304324 aaatgttaacgagtgcccccgagacactctttaagagtctagaatagtaacttttt 21304379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 608
Target Start/End: Complemental strand, 33229749 - 33229721
Alignment:
Q  580 gtctctgtgagcttaactcagttggtagg 608  Q
    |||||||||||||||||||||||||||||    
T  33229749 gtctctgtgagcttaactcagttggtagg 33229721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 39912200 - 39912252
Alignment:
Q  30 actctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaata 82  Q
    |||||||||||| |||  ||||||| ||||||||||||  |||||||||||||    
T  39912200 actctttaagagcctacgatagtaattttttatgaaaatctatgtatttaata 39912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 20394771 - 20394652
Alignment:
Q  161 agaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtgcc 260  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||| |||| |||||||  |||| ||||||||||||||||| || ||||  |||| |    
T  20394771 agaaagttttaaattgaaaaagacactttatttacttttaagggattgacaacacaatttccaatgtaatacatactatatttggttgttaatcagtgtc 20394672  T
Q  261 ctagggcactaattaacatt 280  Q
    |  |||||||| ||||||||    
T  20394671 caggggcactagttaacatt 20394652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 6009895 - 6009810
Alignment:
Q  171 aaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagt 257  Q
    ||||| |||||||||||||||| ||||||||| |||||  || |||||||  ||| ||||||||||||||||| |||||||||||||    
T  6009895 aaattgaaaaagacactttattaacttttaagggattag-aacacaatttacaatacaatacatactatatttacttcttaactagt 6009810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 24150597 - 24150667
Alignment:
Q  150 aaatcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattt 220  Q
    |||||| ||||| |||||||||||||  |||||| | |||||||||||||| | |||| |||| |||||||    
T  24150597 aaatcataaagaaaaagttttaaattataaaagatattttattgacttttacgagattcacaacacaattt 24150667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 25028688 - 25028760
Alignment:
Q  27 ggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||||||||||||||  |||  ||| ||||||| ||||| | |||||| ||| |||| ||||||||||||    
T  25028688 ggcactctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaactg 25028760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 29213313 - 29213226
Alignment:
Q  162 gaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttct 249  Q
    |||| |||||| || ||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||||| |||||    
T  29213313 gaaaattttaatttaaaaaagacactttattgacttttaagtgattgacaacacaatttccaatgcaatacatactatatttacttct 29213226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 36936326 - 36936405
Alignment:
Q  158 aagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatact 237  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||| |||| |||| |||||||| |||||||||||||||    
T  36936326 aagagaaaattttaaattaaaaaagatactttattgacttttaagggattgacaacacaattttcaatgcaatacatact 36936405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 140 - 253
Target Start/End: Original strand, 25737858 - 25737972
Alignment:
Q  140 actagttaagaaatc-agaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatacta 238  Q
    ||||||||||||| | | ||||| ||| ||||||||| |||||||||||||||||| ||||||| |||| |||| |||||||  |||  |||||||||||    
T  25737858 actagttaagaaaactataaagaaaaaattttaaattaaaaaagacactttattgatttttaagggattgacaacacaatttccaatataatacatacta 25737957  T
Q  239 tatttgcttcttaac 253  Q
    |||||| ||||||||    
T  25737958 tatttggttcttaac 25737972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 954940 - 954821
Alignment:
Q  139 cactagttaagaaa-tcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaataca-tac 236  Q
    |||||||||||||| ||| ||||| ||| |||||| |||||||| ||| |||||||||||||||  |||| | || | |||||| ||||||||||| |||    
T  954940 cactagttaagaaaatcataaagaaaaaattttaa-tttaaaaaaacattttattgacttttaaaggattgaaaacataattttcaatgcaatacattac 954842  T
Q  237 tatatttgcttcttaactagt 257  Q
    |||||||||||||||||||||    
T  954841 tatatttgcttcttaactagt 954821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 43804107 - 43804016
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||| ||||||||  |||||| | |||||||| | |||||||||||| ||||||||||||||| |||||||||||||||  ||||||||    
T  43804107 aaatgttaacgagtgcccccggggtattctttaagtgcctagaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaa 43804016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 31625308 - 31625389
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacatt 86  Q
    ||||||| ||||||||| |||| ||||||||||||||  ||||||  ||| ||||||||||||||| |||||||||||||||    
T  31625308 aaatgttaacgagtgctcccggagcactctttaagagcttagaatgataattttttatgaaaacttgtgtatttaatacatt 31625389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 34104343 - 34104423
Alignment:
Q  171 aaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaac 253  Q
    ||||| ||||| |||||||||||||||||||| |||| |||||  |||||  || ||| ||||||||||||||||||||||||    
T  34104343 aaattgaaaaatacactttattgacttttaagggattgacaat--aatttctaacgcactacatactatatttgcttcttaac 34104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 46752906 - 46753025
Alignment:
Q  135 cggacactagttaag-aaatcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaataca 233  Q
    |||||||| |||||| ||| || ||| | ||||||||||||| ||||| | ||||| |||||||||||  |||| |||| | |||||  |||||||||||    
T  46752906 cggacactggttaaggaaaccaaaaaaataaagttttaaattgaaaaatatactttgttgacttttaaaggattgacaacataatttccaatgcaataca 46753005  T
Q  234 tactatatttgcttcttaac 253  Q
    ||| || |||||||||||||    
T  46753006 tacaatgtttgcttcttaac 46753025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 54290746 - 54290839
Alignment:
Q  5 aaatgttgacgagtgctaccggggcactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||| ||||||||  ||| || |||||||||||| ||| |||| ||  ||||||||||||||| |||||||||||||||  |||||||||||    
T  54290746 aaatgttaacgagtgcc-ccgaggtactctttaagagcctaaaataatatctttttatgaaaacttgtgtatttaatacattggaaattgaactg 54290839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 55118677 - 55118738
Alignment:
Q  223 aatgcaatacatactatatttgcttcttaactagtgccctagggcactaattaacattaccc 284  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||   ||||||||||||    
T  55118677 aatgcaatacatactatatttgcttcttaactagtgtccgggggcaccggttaacattaccc 55118738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 51039847 - 51039800
Alignment:
Q  51 gtaaatttttatgaaaacttatgtatttaatacattaaaaattgaact 98  Q
    ||||||||||||||||| ||||||||| ||| |||| |||||||||||    
T  51039847 gtaaatttttatgaaaatttatgtattcaattcattgaaaattgaact 51039800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 37822604 - 37822645
Alignment:
Q  52 taaatttttatgaaaacttatgtatttaatacattaaaaatt 93  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  37822604 taaatttttatgaaaatatgtgtatttaatacattaaaaatt 37822645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 1923943 - 1923855
Alignment:
Q  170 taaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaactagtg 258  Q
    |||||| ||||| |||||||||||||||||||| |||| |||| |||||| | |||||||||||| ||||||||||||||||| |||||    
T  1923943 taaattgaaaaatacactttattgacttttaagggattgacaacacaattcttaatgcaatacatgctatatttgcttcttaattagtg 1923855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 25437866 - 25437936
Alignment:
Q  29 cactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaactg 99  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||  |||||||||||    
T  25437866 cactctttaagagcctagaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaactg 25437936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 6923425 - 6923523
Alignment:
Q  151 aatcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttct 249  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||||||||||||  ||| |||| |||||||   | |||||||||||||||| |||||||    
T  6923425 aatcagaaaaagaaagttttaaaataaaaaatacactttattgacttttaaggaattgacaacacaatttctgaggcaatacatactatatatgcttct 6923523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 31547350 - 31547284
Alignment:
Q  136 ggacactagttaagaaa-tcagaaagagaaagttttaaatttaaaaagacactttattgacttttaa 201  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  31547350 ggacactaattaagaaaatcataaagagaaagttttaaatttaaaaaaacactttattgacttttaa 31547284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 154 - 283
Target Start/End: Complemental strand, 38836261 - 38836131
Alignment:
Q  154 cagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacatactatatttgcttcttaac 253  Q
    |||||| ||||||||||||| | ||||| ||||||||||||||||||||  ||| |||| | |||||   | | |||||||||||||| |||| || |||    
T  38836261 cagaaaaagaaagttttaaaataaaaaatacactttattgacttttaaggaattgacaacataatttccgaggtaatacatactatatatgctcctaaac 38836162  T
Q  254 tagtgccct-agggcactaattaacattacc 283  Q
    |||||||||  |||||||| |||||||||||    
T  38836161 tagtgccctgggggcactagttaacattacc 38836131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 36959171 - 36959277
Alignment:
Q  150 aaatcagaaagagaaagttttaaatttaaaaagacactttattgacttttaagtgattaacaatacaattttgaatgcaatacat-actatatttgcttc 248  Q
    |||||| | ||| |||||||||| || ||||||||| |||||  ||||||||| |||| | || | |||||| ||| |||||||| ||||||||||||||    
T  36959171 aaatcatacagaaaaagttttaatttaaaaaagacattttataaacttttaagggattgaaaacataatttttaatacaatacattactatatttgcttc 36959270  T
Q  249 ttaacta 255  Q
    |||||||    
T  36959271 ttaacta 36959277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 42877340 - 42877291
Alignment:
Q  47 aatagtaaatttttatgaaaacttatgtatttaatacattaaaaattgaa 96  Q
    ||||||||||||||||| ||| || |||||| |||||||| |||||||||    
T  42877340 aatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaa 42877291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 24041015 - 24041067
Alignment:
Q  29 cactctttaagagtctagaatagtaaatttttatgaaaacttatgtatttaat 81  Q
    |||| |||||| ||||  |||||||| |||||||||||| |||||||||||||    
T  24041015 cactttttaagggtcttaaatagtaactttttatgaaaagttatgtatttaat 24041067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University