View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_high_2 (Length: 456)
Name: NF9321_high_2
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 456
Target Start/End: Complemental strand, 1714022 - 1713578
Alignment:
| Q |
12 |
attatactttgatcttaaggtattgcggtagccacaagcataacatgaaacaaggcatccaggtaatcccaaaaacaggccatcggttaacaagcagcag |
111 |
Q |
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| T |
1714022 |
attatactttgatcttaaggtattgcggtagccacaagcataacatgaaacaaggcatccaggtaatcccaaaaacaggccatcggttaacaagcagcag |
1713923 |
T |
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| Q |
112 |
gctgtattaacaagactccacaatataaaatgggtaacacatgatcccatgaacgtgccagaacctagaaattctgcattcttcccaaagaggtagcaag |
211 |
Q |
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| T |
1713922 |
gctgtattaacaagactccacaatataaaatgggtaacacatgatcccatgaacgtgccagaacctagaaattctgcattcttcccaaagaggtagcaag |
1713823 |
T |
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| Q |
212 |
gacaaagacaacctatacaacctgcacagaagccgaaagtttgtaaccaatcttttcatttgccagtttatcgaaaaagaacagaacaaactttttgtaa |
311 |
Q |
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| T |
1713822 |
gacaaagacaacctatacaacctgcacagaagccgaaagtttgtaaccaatcttttcatttgccagtttatcgaaaaagaacagaacaaactttttgtaa |
1713723 |
T |
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| Q |
312 |
catacagaaaggtaaaaacaaaagatgagctttttatagtataatttaaatattttaatcaacaagctnnnnnnncatttgactaattacggtgttaaat |
411 |
Q |
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| T |
1713722 |
catacagaaaggtaaaaacaaaagatgagctttttatagtataatttaaatattttaatcaacaagctaaaaaaacatttgattaattacggtgttaaat |
1713623 |
T |
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| Q |
412 |
attgatgnnnnnnnncttactccatgccctttatatatacatcaa |
456 |
Q |
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| T |
1713622 |
attgatgttttttttcttactccatgccctttatatatacatcaa |
1713578 |
T |
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