View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_10 (Length: 434)
Name: NF9321_low_10
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 3500667 - 3500250
Alignment:
| Q |
1 |
agttaaaagcagaaaaggaatcttctaatttaagaatttttggcactcatatattgaattgaacctttggaggatatagctaataagcattagatgttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3500667 |
agttaaaagcagaaaaggaatcttctaatttaagaatttttggcactcatatattgaattgaacctttggaggatatagctaataagcattagatgttag |
3500568 |
T |
|
| Q |
101 |
attgactacttctcaagttgtaatcaaatctttatgaaattgctgtttcacaaccagaggggcagtataattgatttcaacagtaatgtccaggatcttc |
200 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3500567 |
attgaccccttttcaagttgtaatcaaatctttatgaaattgctgtttcacaaccagaggggcagtataattgatttcaacagtaatgtccaggatcttc |
3500468 |
T |
|
| Q |
201 |
atgatgactatataagttaaatcatgataataatcataacaccttatttgtataatattggtaaaataagaaataagctgaattgaatataaatgataca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3500467 |
atgatgactatataagttaaatcatgataataatcataacaccttatttatataatattgataaaataagaaataagctgaattgaatataaatgataca |
3500368 |
T |
|
| Q |
301 |
atctagacagctgaggaaattgagatcctctaacaagagttgagtacgctcatatatggaaatatttccgttgatttgcttgatggactgttcgtcttat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
3500367 |
atctagacagctgaggaaattgagatcctctaacaagagttgagtacgctcatatatggaaatatttctgttgatttccttgatggactgttcgtcttat |
3500268 |
T |
|
| Q |
401 |
ggaattaatacttgatgt |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
3500267 |
ggaattaatacttgatgt |
3500250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3513030 - 3512801
Alignment:
| Q |
1 |
agttaaaagcagaaaaggaatcttctaattt-aagaatttttggcactcatatattgaattgaacctttggaggatatagctaataagcattagatgtta |
99 |
Q |
| |
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|||| |||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| | |
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| T |
3513030 |
agttgaaagcagagaaggaatcttctatttttaagaatttttggcactcatattttgaattgaacctttggaggatatagccaataagcatcagatgtca |
3512931 |
T |
|
| Q |
100 |
gattgactacttctcaagttgtaatcaaatctttatgaaattgctgtttcacaaccagaggggcagtataattgatttcaacagtaatgtccaggatctt |
199 |
Q |
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||| |||| ||| ||||||| |||||||||||||||||||| |||| |||| |||||| | ||||||||||||||||||||| ||| |||||||| |
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| T |
3512930 |
gatagactccttttcaagttctaatcaaatctttatgaaat-----tttcgcaactggaggggtaatataattgatttcaacagtaaagtctaggatctt |
3512836 |
T |
|
| Q |
200 |
catgatgactatataagttaaatcatgataataat |
234 |
Q |
| |
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|||||||| |||||| |||| ||||| |||||||| |
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|
| T |
3512835 |
catgatgagtatatatgttacatcataataataat |
3512801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 3512768 - 3512679
Alignment:
| Q |
243 |
cttatttgtataatattggtaaaataagaaataagctgaattgaatataaatgatacaatctagacagctgaggaaattgagatcctcta |
332 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| | | |||||||||||||||||||| |
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|
| T |
3512768 |
cttatttgtatattattggtaaaataagaaataagctgaattgaatataaataatacaatttagaaaaccgaggaaattgagatcctcta |
3512679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 3512624 - 3512579
Alignment:
| Q |
349 |
ctcatatatggaaatatttccgttgatttgcttgatggactgttcg |
394 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
3512624 |
ctcatttatggaaatatctccgttgatttgcttgatggactgttcg |
3512579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 2352844 - 2352888
Alignment:
| Q |
348 |
gctcatatatggaaatatttccgttgatttgcttgatggactgtt |
392 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
2352844 |
gctcatttatggaaatatctccgttgatttgcttgatggactgtt |
2352888 |
T |
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