View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_12 (Length: 425)
Name: NF9321_low_12
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_12 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 44313849 - 44314255
Alignment:
| Q |
1 |
tgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgcctgaatcatggaacgattacaagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44313849 |
tgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgtctgaatcatggaacgattacaagaa |
44313948 |
T |
|
| Q |
101 |
ccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagaggataccaaccgaaaggagagcagggctaccaaggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
44313949 |
ccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagagaataccaaccgaaaggagagcagggctgccaaggcc |
44314048 |
T |
|
| Q |
201 |
agggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcacaataaaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44314049 |
agggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcactataaaaata |
44314148 |
T |
|
| Q |
301 |
attatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgttatgtatgtggtaagataggtcactatgcacctcagtgcagaca |
400 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314149 |
atcatgttcctcgtgttactaatcccactttcacaaatggaaatggaggacattgttatgtatgtggtaagataggtcactatgcacctcagtgcagaca |
44314248 |
T |
|
| Q |
401 |
ccgaaag |
407 |
Q |
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||||||| |
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| T |
44314249 |
ccgaaag |
44314255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 34099043 - 34098637
Alignment:
| Q |
1 |
tgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgcctgaatcatggaacgattacaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34099043 |
tgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgtctgaatcatggaacgattacaagaa |
34098944 |
T |
|
| Q |
101 |
ccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagaggataccaaccgaaaggagagcagggctaccaaggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
34098943 |
ccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagagaataccaaccgaaaggagagcagggctgccaaggcc |
34098844 |
T |
|
| Q |
201 |
agggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcacaataaaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34098843 |
agggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcactataaaaata |
34098744 |
T |
|
| Q |
301 |
attatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgttatgtatgtggtaagataggtcactatgcacctcagtgcagaca |
400 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098743 |
atcatgttcctcgtgttactaatcccactttcacaaatggaaatggaggacattgttatgtatgtggtaagataggtcactatgcacctcagtgcagaca |
34098644 |
T |
|
| Q |
401 |
ccgaaag |
407 |
Q |
| |
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||||||| |
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|
| T |
34098643 |
ccgaaag |
34098637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 159 - 407
Target Start/End: Complemental strand, 40565 - 40317
Alignment:
| Q |
159 |
atagaggataccaaccgaaaggagagcagggctaccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggt |
258 |
Q |
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|||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
40565 |
atagaggataccaacctaaaggagagcagggctgccaaagccagggctttagcttcccaagcaaatctgatccaaaacaacactaattagaaaaagaggt |
40466 |
T |
|
| Q |
259 |
atgataacaaacctaatcgtaaatctggtcacaataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgtta |
358 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
40465 |
atgataacaaacctaatcataaacctggtcacaataaaaataatcatgttcctcgtgttactaatccctctttcgaaaatggaaatggaggacactgtta |
40366 |
T |
|
| Q |
359 |
tgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaag |
407 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40365 |
tgtatgtggtaagaaaggtcactatgcacctcagtgcagacaccgaaag |
40317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 40682 - 40568
Alignment:
| Q |
1 |
tgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgcctgaatcatggaacgattacaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
40682 |
tgattgaagaattaaaggctgaagatattc---tcccagacgatttcattgatggaattctcattgaaaaattgtcggaatcatggaacgattacaagaa |
40586 |
T |
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| Q |
101 |
ccagctgaagcacaagca |
118 |
Q |
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|||| ||||||||||||| |
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| T |
40585 |
ccagttgaagcacaagca |
40568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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