View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_13 (Length: 391)
Name: NF9321_low_13
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 25741297 - 25740918
Alignment:
| Q |
11 |
cagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgct |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741297 |
cagacggggtagactaatagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgct |
25741198 |
T |
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| Q |
111 |
cttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaag |
210 |
Q |
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| T |
25741197 |
cttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaatcaagag |
25741098 |
T |
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| Q |
211 |
tatcaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcgnnnnnnnnataaaggacg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25741097 |
tatcaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcg-tttttttataaaggacg |
25740999 |
T |
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| Q |
311 |
aactgaaccaacaatggatgaatcttagtggatcgtgacaacaaggtcactctgtcacttgcttactctgctgagtatcta |
391 |
Q |
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| T |
25740998 |
aactgaaccaacaacggatgaatcttagtggatcgtgacaacaaggtcactctgtcacttgcatactctgccgagtatcta |
25740918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 25744831 - 25744588
Alignment:
| Q |
11 |
cagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgct |
110 |
Q |
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| T |
25744831 |
cagatggggtagactaacagaagaattatgccaatggaatttgatacgccatttgctctagtgaaggagtttctgaaaccaccagatgcacgaatatgct |
25744732 |
T |
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| Q |
111 |
cttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25744731 |
cttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaatcaaaag |
25744632 |
T |
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| Q |
211 |
tatcaaagcacccggcaactccaaccaatctgcagaaacaatca |
254 |
Q |
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| T |
25744631 |
tatcaaagcacccggcaactccaaccaatctgcagaaacaatca |
25744588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 25740922 - 25740866
Alignment:
| Q |
332 |
atcttagtggatcgtgacaacaaggtcactctgtcacttgcttactctgctgagtat |
388 |
Q |
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| T |
25740922 |
atctaagtggatcgtgacaacaaggtcaccgtgttacttacttactctgctgtgtat |
25740866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 12514819 - 12514625
Alignment:
| Q |
26 |
aacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataac |
125 |
Q |
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| T |
12514819 |
aacagaagaattatgccaattgtatttgatattccatgagcttttgttaaagaatctctaaaaccaccagatgcccgaatttgttcttgtagcaaataac |
12514720 |
T |
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| Q |
126 |
atgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaagtatcaaagca |
220 |
Q |
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| T |
12514719 |
atgcaatgacaaggcatactaccaagccaacttcatcgcttctaaaggtgtttgcaaatagatcgggagcaacaacaataagaagaatcaaagca |
12514625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 12510955 - 12510825
Alignment:
| Q |
11 |
cagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgct |
110 |
Q |
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|||| |||||||| || ||||||||||||||||| | |||||| | ||||| ||||| ||||| || | ||| || ||||| ||||| |||||||| | |
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| T |
12510955 |
cagatggggtagattagcagaagaattatgccaattgtatttgacatgccataagcttttgtgaatgaatctctaaagccaccggatgcccgaatatgtt |
12510856 |
T |
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| Q |
111 |
cttgtagcaaataacatgcaatgacaaggca |
141 |
Q |
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| T |
12510855 |
cttgcagcaaataacatgcaatgataaggca |
12510825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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