View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_18 (Length: 363)
Name: NF9321_low_18
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 51878091 - 51878306
Alignment:
| Q |
17 |
acaaaacagtatcactaatcctcctttctcttccttcccattaaccagatcaaattggcatgaccataaaagtcacaaacgggtccctccatttatagga |
116 |
Q |
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| T |
51878091 |
acaaaactgtatcactaatcctcctttctcttccttcccattaaccagatcaaattggcatgaccataaaagtcacaaacgggtccctccatttatagga |
51878190 |
T |
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| Q |
117 |
caccaattctcttaaactgtaaaagtaaaaccatgtcataagttgattacattatgagtaatttggctattgagcaattcaattgtacactctatatcta |
216 |
Q |
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| T |
51878191 |
caccaattctcttaaactgtaaaagtaaaaccatgtcataagttgattacattatgagtaatttggctattgagcaattcaattgtacactctatatcta |
51878290 |
T |
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| Q |
217 |
taagtagccaacaggt |
232 |
Q |
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| T |
51878291 |
taagtagccaacaggt |
51878306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 51878374 - 51878432
Alignment:
| Q |
301 |
ttaagagcatgatttatttacctca---aatctcttaacaaaattttatgcaccaccaa |
356 |
Q |
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| T |
51878374 |
ttaagagcatgatttatttacctcatcaaatctcttaacaaaattttatgcaccaccaa |
51878432 |
T |
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