View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_23 (Length: 352)
Name: NF9321_low_23
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 35046657 - 35046338
Alignment:
| Q |
17 |
atttatattgttctgttgtatggagtggagttctaagattatggagggactaaatatctatcagaaattagttgcatctttgtttcaagttacaaatgtt |
116 |
Q |
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| T |
35046657 |
atttatattgttctgttgtatggagtggagttctaagattatggagggactaaatatctatcagaaattagttgcatctttgtttcaagttacaaatgtt |
35046558 |
T |
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| Q |
117 |
agacattctggtgaatctgtttttgatacatactccatctcttcagccatattggtgctcttcattgtcatgatgtaagttactatctttcttccctaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35046557 |
agacattctggtgaatctgtttttgatacatactccatctcttctgccatattggtgctcttcattgtcatgatgtaagttactatctttcttccctaat |
35046458 |
T |
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| Q |
217 |
gctacgttgtatctataacatttattaaatagttgctattaatatggttgctaggtcatatataaaatatgtagagtccaaacatttatttatatggttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35046457 |
gctacgttgtatctataacatttattaaatagttgctattaatatggttgctaggtcatatataaaatatgtagagtccaaacatttatttatatggttc |
35046358 |
T |
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| Q |
317 |
cccatgttgatttaagatcc |
336 |
Q |
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|||||||||||||||||||| |
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| T |
35046357 |
cccatgttgatttaagatcc |
35046338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 35000296 - 35000140
Alignment:
| Q |
17 |
atttatattgttctgttgtatggagtggagttctaagattatggagggactaaatatctatcagaaattagttgcatctttgtttcaagttacaaatgtt |
116 |
Q |
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|||| ||||||| |||| ||||| |||||||| || |||||||||| || ||| | ||| ||||| | |||||| |||||||||||||| |||||| | |
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| T |
35000296 |
atttgtattgttttgttccatggaatggagttccaatattatggaggatcttaatctatatgagaaagtggttgcaactttgtttcaagtttcaaatgct |
35000197 |
T |
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| Q |
117 |
agacattctggtgaatctgtttttgatacatactccatctcttcagccatattggtg |
173 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
35000196 |
agacattctggtgaatctgtttttgatctctctaccatctcctcagccatattggtg |
35000140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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