View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_25 (Length: 349)
Name: NF9321_low_25
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_25 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 12266618 - 12266270
Alignment:
| Q |
1 |
ccttgcaggtcatggtttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatcccactaa |
100 |
Q |
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| T |
12266618 |
ccttgcaggtcatggtttgattgatgcgcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatcccactaa |
12266519 |
T |
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| Q |
101 |
tgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12266518 |
tgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttcata |
12266419 |
T |
|
| Q |
201 |
cttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaagtggatcttgacaagaagaggaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12266418 |
cttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaagtggatcttgacaagaagtggaatga |
12266319 |
T |
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| Q |
301 |
atgaattgtatcatcttttccaccccatcttctctaatggaagaaaaag |
349 |
Q |
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| T |
12266318 |
atgaattgtatcatcttttccaccccatcttctctaatggaagaaaaag |
12266270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 12426202 - 12426550
Alignment:
| Q |
1 |
ccttgcaggtcatggtttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatcccactaa |
100 |
Q |
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||||||||| || ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||| |||| | ||||| |||||| ||| |
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| T |
12426202 |
ccttgcagggcagggtttgattgatgctcgtttataatgctttctaaaatcatatccaacttcttttgcaaattctccaattttggttttatcccagtaa |
12426301 |
T |
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| Q |
101 |
tgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttcata |
200 |
Q |
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| ||||||||||||||||||||||| |||| ||||| |||||||||| | || |||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
12426302 |
ttaaatgaataggtttaaatgaaggaaacaaatcagcaacatcaaaaccacttgccatttccattgcttgcttgagcaaacacaacagatcatcttcata |
12426401 |
T |
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| Q |
201 |
cttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaagtggatcttgacaagaagaggaatga |
300 |
Q |
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| T |
12426402 |
cttagattttttaccaaaagttgcccttgaaacaaaggaacttaccaaagaactaaccattttagtaagatcaagtggatcttgacaagaagaggaatga |
12426501 |
T |
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| Q |
301 |
atgaattgtatcatcttttccaccccatcttctctaatggaagaaaaag |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12426502 |
atgaattgtatcatcttttccaccccatcttctctaatggaagaaaaag |
12426550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 55955890 - 55956126
Alignment:
| Q |
16 |
tttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatcccactaatgaaatgaataggtt |
115 |
Q |
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|||||||||||||| || ||||| |||| |||||| |||| | ||||||||| | ||||| |||| ||| |||| ||| | | || | ||||||||||| |
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| T |
55955890 |
tttgattgatgctctttgataatgctttctaaaatcttatccagcttcttttgcatattctgcaatttagctttcgtccgagtgataagatgaataggtt |
55955989 |
T |
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| Q |
116 |
taaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttcatacttagattttttacc |
215 |
Q |
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| T |
55955990 |
taaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatcttcatatttagattttttacc |
55956089 |
T |
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| Q |
216 |
aaaagttgcccttgaaataaaggaacttaccaaagaa |
252 |
Q |
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| T |
55956090 |
aaatgctgctcttgaaacaaaggtacttaccaaagaa |
55956126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 55959334 - 55959569
Alignment:
| Q |
16 |
tttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatcccactaatgaaatgaataggtt |
115 |
Q |
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|||| |||||||||||| ||||| |||| ||||| |||| ||||||| || | | ||| |||||||| ||| ||| | |||| |||||||||| || |
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| T |
55959334 |
tttgtttgatgctcgttgataatgctttctaaaattttatccgacttcttctgcatactctgcaatctagctttagtcctagtaataaaatgaatagctt |
55959433 |
T |
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| Q |
116 |
taaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttcatacttagattttttacc |
215 |
Q |
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| ||||||| ||||| |||| |||||| ||| | | ||||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| |
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| T |
55959434 |
tgaatgaagcgaacaaatcaacaacatcgaaaccactcgccatttccactgattccttgagcaaacatagaagttcatcttcatatttagatttttaacc |
55959533 |
T |
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| Q |
216 |
aaaagttgcccttgaaataaaggaacttaccaaaga |
251 |
Q |
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||| | || ||||||| ||||| |||||||||||| |
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| T |
55959534 |
aaacgccgctcttgaaacaaaggtacttaccaaaga |
55959569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 55959613 - 55959664
Alignment:
| Q |
298 |
tgaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaag |
349 |
Q |
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|||||| ||||||| | |||||| ||| |||||||||||||||||||||||| |
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| T |
55959613 |
tgaatggattgtataagcttttctacctcatcttctctaatggaagaaaaag |
55959664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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