View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_26 (Length: 347)

Name: NF9321_low_26
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_26
NF9321_low_26
[»] chr3 (3 HSPs)
chr3 (137-210)||(45391295-45391368)
chr3 (231-302)||(45391400-45391471)
chr3 (41-73)||(45391199-45391231)
[»] chr4 (2 HSPs)
chr4 (137-205)||(734903-734971)
chr4 (41-73)||(734807-734839)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 45391295 - 45391368
Alignment:
Q  137 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactctgcttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391295 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactctgcttt 45391368  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 45391400 - 45391471
Alignment:
Q  231 gcactactacaatacacttcaaattcaataggtatatgatatgataaaggctatttataatctcattttcag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391400 gcactactacaatacacttcaaattcaataggtatatgatatgataaaggctatttataatctcattttcag 45391471  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 45391199 - 45391231
Alignment:
Q  41 ctaaacaaaataaaattgctcagaatcagcgcc 73  Q
    |||||||||||||||||||||||||||||||||    
T  45391199 ctaaacaaaataaaattgctcagaatcagcgcc 45391231  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 734903 - 734971
Alignment:
Q  137 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734903 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactct 734971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 734807 - 734839
Alignment:
Q  41 ctaaacaaaataaaattgctcagaatcagcgcc 73  Q
    |||||||||||||||||||||||||||||||||    
T  734807 ctaaacaaaataaaattgctcagaatcagcgcc 734839  T

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