View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_27 (Length: 347)

Name: NF9321_low_27
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_27
NF9321_low_27
[»] chr3 (3 HSPs)
chr3 (137-210)||(45391295-45391368)
chr3 (231-302)||(45391400-45391471)
chr3 (41-73)||(45391199-45391231)
[»] chr4 (2 HSPs)
chr4 (137-205)||(734903-734971)
chr4 (41-73)||(734807-734839)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 45391295 - 45391368
Alignment:
Q  137 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactctgcttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391295 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactctgcttt 45391368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 45391400 - 45391471
Alignment:
Q  231 gcactactacaatacacttcaaattcaataggtatatgatatgataaaggctatttataatctcattttcag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391400 gcactactacaatacacttcaaattcaataggtatatgatatgataaaggctatttataatctcattttcag 45391471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 45391199 - 45391231
Alignment:
Q  41 ctaaacaaaataaaattgctcagaatcagcgcc 73  Q
    |||||||||||||||||||||||||||||||||    
T  45391199 ctaaacaaaataaaattgctcagaatcagcgcc 45391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 734903 - 734971
Alignment:
Q  137 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734903 gagttatctttcaatacctcccccattggtgttactctgctgctgagataagcttcgaagagggactct 734971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 734807 - 734839
Alignment:
Q  41 ctaaacaaaataaaattgctcagaatcagcgcc 73  Q
    |||||||||||||||||||||||||||||||||    
T  734807 ctaaacaaaataaaattgctcagaatcagcgcc 734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University