View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_28 (Length: 336)
Name: NF9321_low_28
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_28 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 3106 - 2800
Alignment:
| Q |
11 |
agacaaataaagaagaagaattttacttgagagcatccaagtccttgtaagtagcttttttcttaatcattaatattacaacctttgtttcagtatcaaa |
110 |
Q |
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| T |
3106 |
agacaaataaagaagaagaattttacttgagagcatccaagtccttgtaagtagctttcttcttaatcattaatattacaacctttgtttcagtatcaaa |
3007 |
T |
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| Q |
111 |
agcaactatacaagctgttgatactaagaacaatattgctgaaactcttagcaaaacttctccttttgccattcggaattccatttcttcggagataaaa |
210 |
Q |
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| T |
3006 |
agcaactatacaagctgttgatactaagaacaatattgctgaaactcttagcaaaacttctccttttgccattcggaattccatttcttcagagataaaa |
2907 |
T |
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| Q |
211 |
attgtccagtactcctatatcctttcnnnnnnnnnnnnnnntgtctagtattctaaattttagtgccaattggagatcatttatgtaatgtaagatatgg |
310 |
Q |
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| T |
2906 |
attgt-cagtactcctatatcctttcaaaaaaaataaaaaatgtctagtattctaaattttagtgccaattggagatcatttatggaatgtaagatatgg |
2808 |
T |
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| Q |
311 |
catataca |
318 |
Q |
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| T |
2807 |
catataca |
2800 |
T |
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