View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_29 (Length: 320)

Name: NF9321_low_29
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_29
NF9321_low_29
[»] chr5 (1 HSPs)
chr5 (18-311)||(37068416-37068709)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 37068416 - 37068709
Alignment:
Q  18 caagtgaagtttaagaaaataagagatatttttacacatgtttccactatgttaagtgtactagttttcacttttcccctgtcatattttcattctcact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37068416 caagtgaagtttaagaaaataagagatatttttacacatgtttccactatgttaagtgtactagttttcacttttcccctgtcatattttcattctcact 37068515  T
Q  118 tttattttacttttgtgctagtaaaatatatatgcaaagaaaaaattgtggagtccggacttgcatgattaataaatacaaaagcaattctatatcactc 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37068516 tttattttacttttatgctagtaaaatatatatgcaaagaaaaaattgtggagtccggacttgcatgattaataaatacaaaagcaattctatatcactc 37068615  T
Q  218 caaaacagaatggaaagtttcatattaggtattggggttcttgtgttgctgtatattcttgtttgattaccttgaattcaattgtttttctctg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37068616 caaaacagaatggaaagtttcatattaggtattggggttcttgtgttgctgtatattcttgtttgattaccttgaattcaattgtttttctctg 37068709  T

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