View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_3 (Length: 559)
Name: NF9321_low_3
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 25100247 - 25100057
Alignment:
| Q |
26 |
aattacgttggttgttatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaaccaatg |
125 |
Q |
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| T |
25100247 |
aattacgttggttattatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaatcaatg |
25100148 |
T |
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| Q |
126 |
aatcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
216 |
Q |
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| T |
25100147 |
aatcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
25100057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 347 - 540
Target Start/End: Complemental strand, 25099874 - 25099681
Alignment:
| Q |
347 |
gatcgagttctaacatgtgaattgtttagatctcaatcccgtgatattacaagacgaccaaaagtagccaatttgtgataatttgattgaaggacgagta |
446 |
Q |
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| T |
25099874 |
gatcgagttctaacatgtgaattgtttagatctcaatcccgtgatattacacgacgatcaaaagtagtcaatttgtgataatttgattgaaggacaaata |
25099775 |
T |
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| Q |
447 |
attaacacgaccaaagttatattttacattgctttgttccgatagttagaaaaggattataatcttataagtacaactcagttgatagtcgtag |
540 |
Q |
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| T |
25099774 |
attattacgaccaaagcaacattttacattgctttgtccagatagttagaaaagaattataatcttataagtataattcagttgatagccgtag |
25099681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 25100006 - 25099921
Alignment:
| Q |
264 |
ggaaaatagtactattcatcttttgttgaagaaagtcgaatttcatactatgttttgagaaatatttacttgtgaagttgtttgat |
349 |
Q |
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| T |
25100006 |
ggaaaatagtactatttatcttttgttgaaaaaagtcaaatttcatactatgttttgagaaatatttacttgtgaagttgtttgat |
25099921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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