View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_31 (Length: 301)

Name: NF9321_low_31
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_31
NF9321_low_31
[»] scaffold0159 (2 HSPs)
scaffold0159 (4-297)||(33199-33492)
scaffold0159 (40-124)||(31576-31660)
[»] chr2 (24 HSPs)
chr2 (4-297)||(5788826-5789119)
chr2 (4-297)||(3395405-3395698)
chr2 (4-134)||(36720068-36720200)
chr2 (47-147)||(29651760-29651860)
chr2 (27-125)||(29977336-29977436)
chr2 (4-150)||(34425545-34425692)
chr2 (54-137)||(36729280-36729363)
chr2 (43-137)||(19040696-19040789)
chr2 (8-87)||(41754117-41754198)
chr2 (4-116)||(24967965-24968078)
chr2 (43-137)||(39839082-39839175)
chr2 (209-297)||(41754533-41754620)
chr2 (21-130)||(38796791-38796902)
chr2 (40-123)||(36727624-36727707)
chr2 (46-124)||(20106660-20106738)
chr2 (98-147)||(40599682-40599731)
chr2 (47-147)||(45659829-45659927)
chr2 (44-112)||(19994423-19994490)
chr2 (21-122)||(41753978-41754081)
chr2 (40-78)||(31967092-31967130)
chr2 (21-71)||(12454015-12454067)
chr2 (40-93)||(14903541-14903594)
chr2 (40-124)||(5787203-5787287)
chr2 (40-124)||(39403820-39403904)
[»] chr4 (37 HSPs)
chr4 (4-297)||(13228533-13228825)
chr4 (45-298)||(49953018-49953272)
chr4 (41-298)||(39974683-39974941)
chr4 (41-233)||(281823-282017)
chr4 (14-184)||(11559461-11559631)
chr4 (40-153)||(6554517-6554630)
chr4 (4-148)||(17675240-17675385)
chr4 (72-168)||(28475656-28475752)
chr4 (56-152)||(50158172-50158268)
chr4 (209-297)||(50814634-50814721)
chr4 (46-147)||(6560964-6561065)
chr4 (53-168)||(55050004-55050117)
chr4 (56-135)||(24183432-24183510)
chr4 (49-124)||(36697769-36697844)
chr4 (53-186)||(26289997-26290128)
chr4 (40-129)||(314323-314412)
chr4 (43-124)||(35695054-35695134)
chr4 (40-123)||(42729464-42729545)
chr4 (54-122)||(56340282-56340350)
chr4 (15-169)||(42757545-42757698)
chr4 (46-124)||(316508-316586)
chr4 (46-124)||(13918248-13918326)
chr4 (46-147)||(11560199-11560299)
chr4 (16-90)||(14266234-14266310)
chr4 (98-147)||(52543045-52543094)
chr4 (4-153)||(42756774-42756925)
chr4 (21-71)||(9694408-9694459)
chr4 (103-150)||(22681272-22681319)
chr4 (46-81)||(39977246-39977281)
chr4 (61-128)||(48683181-48683248)
chr4 (40-78)||(313117-313155)
chr4 (40-78)||(6553334-6553372)
chr4 (67-128)||(4237132-4237193)
chr4 (46-150)||(13230882-13230986)
chr4 (67-147)||(13668194-13668274)
chr4 (67-147)||(13681051-13681131)
chr4 (98-146)||(13919329-13919377)
[»] chr8 (46 HSPs)
chr8 (8-298)||(42797242-42797532)
chr8 (8-297)||(23141752-23142042)
chr8 (8-297)||(13756376-13756666)
chr8 (4-154)||(10901395-10901547)
chr8 (41-298)||(21588824-21589082)
chr8 (1-153)||(30254504-30254661)
chr8 (40-150)||(45247765-45247875)
chr8 (18-150)||(23686598-23686732)
chr8 (40-150)||(40885741-40885851)
chr8 (40-149)||(23683105-23683214)
chr8 (14-184)||(38290486-38290658)
chr8 (53-186)||(16313248-16313379)
chr8 (46-124)||(17888052-17888130)
chr8 (53-186)||(34800772-34800903)
chr8 (40-153)||(41527027-41527140)
chr8 (18-147)||(13758881-13759007)
chr8 (40-147)||(367212-367319)
chr8 (40-93)||(357546-357599)
chr8 (22-128)||(16220246-16220354)
chr8 (54-186)||(16250039-16250169)
chr8 (44-124)||(26622857-26622938)
chr8 (53-169)||(37251164-37251278)
chr8 (27-124)||(19263334-19263432)
chr8 (98-150)||(40260477-40260529)
chr8 (46-124)||(8358803-8358881)
chr8 (40-81)||(13758078-13758119)
chr8 (46-147)||(15342301-15342402)
chr8 (46-147)||(15431366-15431467)
chr8 (46-147)||(15522670-15522771)
chr8 (96-152)||(8357693-8357749)
chr8 (21-122)||(42797103-42797206)
chr8 (55-122)||(17871244-17871311)
chr8 (60-123)||(18953362-18953425)
chr8 (46-81)||(21586497-21586532)
chr8 (98-169)||(23525197-23525268)
chr8 (14-70)||(45528252-45528310)
chr8 (57-175)||(14374999-14375117)
chr8 (115-149)||(14376132-14376166)
chr8 (98-188)||(35226668-35226758)
chr8 (81-134)||(758098-758151)
chr8 (100-149)||(5685867-5685916)
chr8 (41-70)||(41787087-41787116)
chr8 (4-76)||(45245034-45245107)
chr8 (21-77)||(4072889-4072945)
chr8 (21-122)||(23141613-23141716)
chr8 (25-78)||(45527334-45527389)
[»] chr5 (17 HSPs)
chr5 (4-297)||(38015885-38016177)
chr5 (46-147)||(9012711-9012812)
chr5 (40-129)||(9024952-9025041)
chr5 (175-298)||(33014000-33014122)
chr5 (4-122)||(27594522-27594641)
chr5 (40-126)||(20966121-20966207)
chr5 (41-128)||(33013892-33013981)
chr5 (53-186)||(8128432-8128563)
chr5 (40-126)||(19910596-19910682)
chr5 (9-186)||(29865827-29866004)
chr5 (53-150)||(4062136-4062231)
chr5 (4-128)||(19320306-19320433)
chr5 (4-116)||(10175893-10176006)
chr5 (53-150)||(7332935-7333030)
chr5 (82-148)||(11770399-11770465)
chr5 (98-147)||(33009855-33009903)
chr5 (98-130)||(2260855-2260887)
[»] chr1 (28 HSPs)
chr1 (4-297)||(43387052-43387344)
chr1 (41-178)||(22636310-22636447)
chr1 (14-148)||(47783134-47783270)
chr1 (40-137)||(20306724-20306820)
chr1 (43-137)||(40946518-40946611)
chr1 (43-137)||(1992421-1992514)
chr1 (53-186)||(17006492-17006623)
chr1 (40-150)||(22541885-22541995)
chr1 (43-137)||(30001736-30001829)
chr1 (45-150)||(15524702-15524807)
chr1 (42-119)||(21469816-21469893)
chr1 (53-169)||(34159485-34159599)
chr1 (22-151)||(49879097-49879228)
chr1 (4-150)||(7844572-7844719)
chr1 (40-119)||(19065744-19065823)
chr1 (40-119)||(19113634-19113713)
chr1 (40-119)||(22538395-22538474)
chr1 (98-168)||(3838181-3838251)
chr1 (40-126)||(43385111-43385197)
chr1 (71-168)||(8313411-8313508)
chr1 (56-124)||(3981637-3981705)
chr1 (98-129)||(3982729-3982760)
chr1 (40-78)||(45919473-45919511)
chr1 (40-78)||(49880577-49880615)
chr1 (74-135)||(16851963-16852024)
chr1 (18-88)||(19098995-19099067)
chr1 (46-143)||(43385727-43385824)
chr1 (4-108)||(26531519-26531623)
[»] chr6 (28 HSPs)
chr6 (12-273)||(1599546-1599808)
chr6 (78-292)||(26894748-26894961)
chr6 (7-200)||(29214239-29214433)
chr6 (40-122)||(31737206-31737288)
chr6 (20-178)||(2976645-2976805)
chr6 (40-119)||(33350293-33350372)
chr6 (43-137)||(7428479-7428572)
chr6 (40-119)||(21984182-21984261)
chr6 (40-150)||(21988808-21988918)
chr6 (18-128)||(11554357-11554469)
chr6 (53-169)||(23410088-23410202)
chr6 (46-148)||(4031518-4031618)
chr6 (20-128)||(4852809-4852919)
chr6 (46-124)||(15878847-15878925)
chr6 (43-137)||(16279074-16279167)
chr6 (4-123)||(24175021-24175141)
chr6 (53-169)||(20872442-20872556)
chr6 (40-147)||(19660319-19660426)
chr6 (22-129)||(9449581-9449690)
chr6 (4-79)||(24397965-24398042)
chr6 (7-43)||(26894975-26895011)
chr6 (40-137)||(26597589-26597684)
chr6 (75-137)||(28365724-28365786)
chr6 (40-77)||(4851983-4852020)
chr6 (40-77)||(11555259-11555296)
chr6 (98-147)||(27436867-27436916)
chr6 (21-122)||(1599848-1599951)
chr6 (98-150)||(20874179-20874231)
[»] scaffold0036 (1 HSPs)
scaffold0036 (4-252)||(50171-50421)
[»] chr3 (32 HSPs)
chr3 (8-151)||(50331915-50332060)
chr3 (41-298)||(36095949-36096207)
chr3 (185-297)||(50332062-50332173)
chr3 (4-150)||(40056502-40056649)
chr3 (40-137)||(20934988-20935084)
chr3 (156-298)||(12746101-12746241)
chr3 (40-126)||(14044290-14044376)
chr3 (40-137)||(17764120-17764216)
chr3 (40-137)||(19065440-19065536)
chr3 (40-149)||(30171174-30171283)
chr3 (40-137)||(32976462-32976558)
chr3 (53-186)||(19817404-19817535)
chr3 (46-124)||(20779566-20779644)
chr3 (43-137)||(42400377-42400470)
chr3 (17-90)||(10020152-10020227)
chr3 (28-125)||(25225304-25225403)
chr3 (40-119)||(20788453-20788532)
chr3 (28-128)||(52753015-52753117)
chr3 (9-122)||(39183069-39183183)
chr3 (40-150)||(39187291-39187401)
chr3 (45-150)||(30169901-30170006)
chr3 (58-136)||(431968-432046)
chr3 (29-124)||(32970436-32970533)
chr3 (22-129)||(34849788-34849897)
chr3 (48-129)||(2250975-2251056)
chr3 (48-129)||(14045389-14045470)
chr3 (21-147)||(9611703-9611832)
chr3 (40-124)||(50241485-50241569)
chr3 (40-134)||(6087838-6087930)
chr3 (46-81)||(12744020-12744055)
chr3 (40-77)||(37835443-37835479)
chr3 (106-147)||(44904856-44904897)
[»] scaffold0380 (2 HSPs)
scaffold0380 (4-118)||(14522-14638)
scaffold0380 (159-290)||(14373-14503)
[»] scaffold0024 (2 HSPs)
scaffold0024 (4-167)||(47112-47277)
scaffold0024 (50-113)||(41449-41512)
[»] chr7 (20 HSPs)
chr7 (5-168)||(38788897-38789060)
chr7 (27-148)||(2452101-2452221)
chr7 (40-137)||(43989681-43989777)
chr7 (67-205)||(17510236-17510374)
chr7 (67-205)||(17542840-17542978)
chr7 (4-186)||(29912532-29912714)
chr7 (51-143)||(4120006-4120098)
chr7 (7-124)||(6677088-6677207)
chr7 (96-148)||(45406685-45406737)
chr7 (67-205)||(17474752-17474890)
chr7 (67-205)||(17578324-17578462)
chr7 (47-135)||(42078960-42079050)
chr7 (23-83)||(2927976-2928038)
chr7 (47-124)||(4110362-4110437)
chr7 (54-120)||(24708451-24708517)
chr7 (43-81)||(26374611-26374649)
chr7 (100-149)||(15464394-15464443)
chr7 (46-91)||(45610345-45610390)
chr7 (100-148)||(5785971-5786019)
chr7 (5-148)||(20181326-20181468)
[»] scaffold0216 (1 HSPs)
scaffold0216 (47-147)||(29168-29268)
[»] scaffold0051 (1 HSPs)
scaffold0051 (15-129)||(12571-12687)
[»] scaffold1345 (1 HSPs)
scaffold1345 (41-137)||(1847-1942)
[»] scaffold0074 (1 HSPs)
scaffold0074 (4-156)||(30812-30965)
[»] scaffold0284 (4 HSPs)
scaffold0284 (46-128)||(6424-6506)
scaffold0284 (40-129)||(826-915)
scaffold0284 (4-124)||(7546-7668)
scaffold0284 (40-78)||(2091-2129)
[»] scaffold1750 (1 HSPs)
scaffold1750 (44-137)||(279-371)
[»] scaffold0191 (1 HSPs)
scaffold0191 (56-153)||(5137-5233)
[»] scaffold0169 (1 HSPs)
scaffold0169 (41-185)||(2229-2376)
[»] scaffold0114 (3 HSPs)
scaffold0114 (40-153)||(37016-37129)
scaffold0114 (40-78)||(35454-35492)
scaffold0114 (40-121)||(1376-1457)
[»] scaffold0012 (1 HSPs)
scaffold0012 (53-169)||(31023-31137)
[»] scaffold0377 (1 HSPs)
scaffold0377 (47-145)||(12554-12654)
[»] scaffold0211 (2 HSPs)
scaffold0211 (40-129)||(18450-18539)
scaffold0211 (40-78)||(19707-19745)
[»] scaffold1743 (1 HSPs)
scaffold1743 (27-124)||(218-316)
[»] scaffold0268 (1 HSPs)
scaffold0268 (53-169)||(19862-19976)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-65)||(45618-45671)
[»] scaffold0017 (1 HSPs)
scaffold0017 (14-65)||(153116-153169)
[»] scaffold0021 (1 HSPs)
scaffold0021 (49-146)||(128292-128389)
[»] scaffold0003 (1 HSPs)
scaffold0003 (98-147)||(50446-50495)
[»] scaffold1819 (1 HSPs)
scaffold1819 (27-71)||(179-223)
[»] scaffold1737 (1 HSPs)
scaffold1737 (98-150)||(510-562)
[»] scaffold1104 (1 HSPs)
scaffold1104 (27-71)||(1701-1745)
[»] scaffold0155 (1 HSPs)
scaffold0155 (232-291)||(22749-22806)


Alignment Details
Target: scaffold0159 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 33199 - 33492
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33199 gacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 33298  T
Q  104 tcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcg 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33299 tcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcg 33398  T
Q  204 ggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  33399 ggtatgatatcaacattgagacttatggggagccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt 33492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 31576 - 31660
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||| |||||||||  |||||||| |||||||||||||||| |||  | |||  || ||||||||| || ||||| ||||||||    
T  31576 atatgggtcatctcatgtatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacat 31660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 5788826 - 5789119
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5788826 gacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 5788925  T
Q  104 tcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcg 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5788926 tcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcg 5789025  T
Q  204 ggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  5789026 ggtatgatatcaacattgagacttatggggagccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt 5789119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 3395405 - 3395698
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  3395405 gacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgttatttta 3395504  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaag 201  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||  ||||||||  ||| ||||||||||||||||    
T  3395505 actcacacctgacacattaacatctctccattaagtatgagactctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaag 3395604  T
Q  202 cgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    ||| || ||||||| |||||  |||||||||||| ||||||||||||||||  |||||| |||||||||||| |||||||||||||| ||||||||    
T  3395605 cggatatgatatcaccattggaacttatggggagacaacacttgtgtgaat--cgacacgttgcagaaagagcaatcacacaagtgaaaatgatgt 3395698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 36720200 - 36720068
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||| ||||||||||| |||| |||||||||  |||||  ||||||||||||||||||| ||||||| || |||||||  || |||   ||||||    
T  36720200 gacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaatttta 36720101  T
Q  102 actcacacttgacacattaacatctcttcatta 134  Q
    |||||||||||||||||||||||||||||||||    
T  36720100 actcacacttgacacattaacatctcttcatta 36720068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 29651860 - 29651760
Alignment:
Q  47 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 146  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||||  | ||||||||||| |||||||||||||||| |||| | |||||||| ||||    
T  29651860 tcatatcacttagatgttgttcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacatcacttcctcaagtatgaaactc 29651761  T
Q  147 t 147  Q
    |    
T  29651760 t 29651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 29977336 - 29977436
Alignment:
Q  27 cttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||||  ||||||||||| |||||||||||||  |||||||| ||| ||||||||||||||  | ||||||| |||||||||||||||||||    
T  29977336 cttaagacattaggtatatgagtcatatcacttatatgtttatcaacatccactcttgcattcaatgtggaactttaacttacacttgacacattaacat 29977435  T
Q  125 c 125  Q
    |    
T  29977436 c 29977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 34425545 - 34425692
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||||||| ||| || ||| |||||  |||||||| || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  34425545 gacaccacatcttcaccctaaacctcaagtcattaatatatgagttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 34425644  T
Q  103 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
     ||||||||||||| ||||| ||| |   | |||||||||||||||||    
T  34425645 atcacacttgacacgttaacctctttctctcaagtatgagactctctg 34425692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 36729280 - 36729363
Alignment:
Q  54 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||||||||||||||||||||||| |||||| |||||||  ||||| |||||||||||||| |||||||| ||| ||| ||||    
T  36729280 acttatatgttgttcaacatctactcttgcatacaatgtgaaatttttactcacacttgacaaattaacatatctccataaagt 36729363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 19040789 - 19040696
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  19040789 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 19040696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 41754117 - 41754198
Alignment:
Q  8 tcacaacttcacccaaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattc 87  Q
    |||||||||||||||||||||||| |||||||||  ||||||||| |||  ||||||||  |||||||||||||||||||||    
T  41754117 tcacaacttcacccaaaatcttaatacattagatacatgagtcatatcatatatatgtttctcaacatctactattgcattc 41754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 24968078 - 24967965
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||||||| ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  24968078 gacaccacatcttcaccctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 24967979  T
Q  103 ctcacacttgacac 116  Q
     |||||||||||||    
T  24967978 atcacacttgacac 24967965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 39839082 - 39839175
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| | ||||||    
T  39839082 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccgttaagt 39839175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 41754533 - 41754620
Alignment:
Q  209 gatatcaacattgagacttatgggg-agccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    ||||||| ||||| ||||||||||| ||||||| |||||||||||  |||||||||||| |||||| |||||||| ||||| ||||||||    
T  41754533 gatatcaccattgggacttatgggggagccaacgcttgtgtgaat--cgacacattgcataaagagcaatcacacgagtgataatgatgt 41754620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 38796902 - 38796791
Alignment:
Q  21 caaaatcttaagacattaga--tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 118  Q
    |||||||||||| |||||||  ||| |||||| |||||||||||||  ||||||| |||| || ||| |||| ||  ||||||| ||||| ||||||||     
T  38796902 caaaatcttaaggcattagacatattagtcatttcacttatatgtttctcaacatatactctttcatccaatatgaaattttaagtcacagttgacacac 38796803  T
Q  119 taacatctcttc 130  Q
    |||||| |||||    
T  38796802 taacatgtcttc 38796791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 36727624 - 36727707
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 123  Q
    |||| ||||||||||| ||||||||  | |||||||||| ||||||  ||||||  ||||||| ||||| ||||||||||||||    
T  36727624 atattagtcatctcacatatatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaaca 36727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 20106660 - 20106738
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||||||| || ||||| ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  20106660 gtcatctcacttatattttattcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 20106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 40599682 - 40599731
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    ||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  40599682 tttaacttacacttaacacattaacatctcttcctcaagtatgagactct 40599731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 45659927 - 45659829
Alignment:
Q  47 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 146  Q
    |||||||||||||||||| ||||| ||||||  |||||| |||| ||| | ||| | ||||| ||||||| ||||||||||| |  ||||| ||||||||    
T  45659927 tcatctcacttatatgtttttcaagatctac--ttgcatccaatttgtaactttgagtcacaattgacactttaacatctctcccataagtgtgagactc 45659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 19994423 - 19994490
Alignment:
Q  44 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttg 112  Q
    |||||||||||||||||| ||| ||| |||||||| |||||| |||| ||  |||||||||||||||||    
T  19994423 gagtcatctcacttatatattgctca-catctactcttgcatacaatttgaaattttaactcacacttg 19994490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 41753978 - 41754081
Alignment:
Q  21 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 118  Q
    ||||| ||||||||||| |||||   ||||||||||||||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  41753978 caaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 41754077  T
Q  119 taac 122  Q
    ||||    
T  41754078 taac 41754081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 31967092 - 31967130
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31967092 atatgagtcatataacttatatgttgttcaacatctact 31967130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 12454067 - 12454015
Alignment:
Q  21 caaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaac 71  Q
    ||||| ||||| |||||||||  ||| ||||||||||||||||||||||||||    
T  12454067 caaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaac 12454015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 14903594 - 14903541
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtg 93  Q
    |||||| |||| |||||||||||||||||||| |||||| || |||||| ||||    
T  14903594 atatgaatcatatcacttatatgttgttcaacgtctactcttacattcattgtg 14903541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 5787203 - 5787287
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||| |||||||||  |||||||| |||||||||||||||| |||  | |||  || ||||||||| || ||||| ||||||||    
T  5787203 atatgggtcatctcatgtatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacat 5787287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 39403820 - 39403904
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||||||| |||||||||||||| || |||  || |||||||| |   | ||||||||||| || ||| ||||||||    
T  39403820 atatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaactttaactcacatttaacaaattaacat 39403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 13228825 - 13228533
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||||||||||||||||| |||||| |||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  13228825 gacatcacaacttcacccaaaattttaaga-attagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttatttta 13228727  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaag 201  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||||  ||||||||  ||| ||||||||||||||||    
T  13228726 actcacacttgacacattaacatctctccattaagtatgagactttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaag 13228627  T
Q  202 cgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    ||| || ||||||| |||||| |||||||||||||||||||||||||||||  | || |||||||||||||| |||||||||||||| ||||||||    
T  13228626 cggatatgatatcaccattgaaacttatggggagccaacacttgtgtgaat--caacgcattgcagaaagagcaatcacacaagtgaaaatgatgt 13228533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 45 - 298
Target Start/End: Original strand, 49953018 - 49953272
Alignment:
Q  45 agtcatctcacttatatgttgttcaacatctactat-tgc-attcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgag 142  Q
    ||||||||||||||||| |||||||| ||||| ||| ||| |||||||||||||||||||  ||||||||||||||||||||||||  ||||| ||||||    
T  49953018 agtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttattttaatccacacttgacacattaacatctctcaattaaatatgag 49953117  T
Q  143 actctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagccaaca 241  Q
    |||||  ||||  | |||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||| | ||| ||||||  |||||| |||||    
T  49953118 actcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagcgtatatgatatcaccgttgggacttacgggggagacaaca 49953217  T
Q  242 cttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 298  Q
    ||||||||| |  ||| |||||||||||| |  || |||||||||||||||||||||    
T  49953218 cttgtgtgatt--cgaaacattgcagaaaaaacaaccacacaagtgagaatgatgtc 49953272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 39974941 - 39974683
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 138  Q
    ||||||||||  |||| ||||||| ||||| ||||| |||   ||||||||| |||||||||||| |||||||||||||||| |||||||  ||||| ||    
T  39974941 tatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttattttaacccacacttgacacattaccatctctcaattaaata 39974842  T
Q  139 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagcc 237  Q
     || ||||| |||||  |||||||||||||||||| ||||||| || ||||||||||||||||||  || ||||||| |||||  |||||  |||||| |    
T  39974841 cgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttgaagcgtatatgatatcaccattggaacttacgggggagac 39974742  T
Q  238 aacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 298  Q
    ||||||||||||| |  |||||||||||||||| |  || |||||| ||||||||||||||    
T  39974741 aacacttgtgtgatt--cgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc 39974683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 282017 - 281823
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 138  Q
    |||||||||||||||| ||||||||||||| || || |||   | |||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||    
T  282017 tatgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaaata 281918  T
Q  139 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagacttatgggg 233  Q
     ||||||||  ||||  |||||||||||||||  | |||||||||| | ||||||||||||||||  || ||||||| ||||| |||||| ||||    
T  281917 cgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgggg 281823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 11559631 - 11559461
Alignment:
Q  14 cttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttga 113  Q
    ||||| |||||  |||||||||||| |||||  ||||| ||||||||||||||||||||| |||| |||||| |||| |   ||||||| |||||||| |    
T  11559631 cttcatccaaaggcttaagacattaaatatggatcatcacacttatatgttgttcaacatttactcttgcatacaatatcaaattttaagtcacacttta 11559532  T
Q  114 cacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgct 184  Q
    || ||||||||||||||| ||||| | ||||||||| ||| || ||||| ||| ||  ||||||| |||||    
T  11559531 catattaacatctcttcaataagtgtcagactctctatgtttgtgatcctccaacaaaaaccactcccgct 11559461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 6554630 - 6554517
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    ||||||||||||||||||||||||| ||||| ||||||| || ||| || | |   ||||||||||||||||||||||||||||||||||  | |||| |    
T  6554630 atatgagtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagttt 6554531  T
Q  140 gagactctctgtgt 153  Q
    |  |||||||||||    
T  6554530 gcaactctctgtgt 6554517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 17675240 - 17675385
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||||||| ||| |||||| |||||| ||||| || || ||||||||||||||||||||||||| || ||||| |||||||  | |||||    
T  17675240 gacaccacatcttcaccctaaaccttaagtcattagtatatgggttatatcacttatatgttgttcaacatctattaatgcatccaatgtggaactttaa 17675339  T
Q  103 ctcacacttgacacattaacatctcttcattaagtatgagactctc 148  Q
     ||||||||||||| ||||| ||| |   | |||||||||||||||    
T  17675340 atcacacttgacacgttaacttctttctctcaagtatgagactctc 17675385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 28475656 - 28475752
Alignment:
Q  72 atctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 168  Q
    ||||||| |||||| |||||||  ||||||||| |||||| |||||||||||||||| |||||||| | |||||||| ||||  | |||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacc 28475752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 50158268 - 50158172
Alignment:
Q  56 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    |||||||||| ||||||| |||| ||||||  ||||||  | ||||||||| ||||||||||||||||||||| |||||||| | | ||||||||||    
T  50158268 ttatatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaagtgtcaaactctctgtg 50158172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 50814721 - 50814634
Alignment:
Q  209 gatatcaacattgagacttatgggg-agccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    ||||||| ||||| ||||||||||| ||||||| |||||||||||  |||||||||||| |||||| |||||||| ||||| ||||||||    
T  50814721 gatatcaccattgggacttatgggggagccaacgcttgtgtgaat--cgacacattgcataaagagcaatcacacgagtgataatgatgt 50814634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 6561065 - 6560964
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    |||||||||||||||||||||| |||||||||| ||| || |||| ||  | ||||||||||| |||| |||||| ||||||| | |||| | |||||||    
T  6561065 gtcatctcacttatatgttgtttaacatctacttttgtatccaatatggaactttaactcacatttgatacattagcatctctcccttaactgtgagact 6560966  T
Q  146 ct 147  Q
    ||    
T  6560965 ct 6560964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 55050117 - 55050004
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  55050117 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 55050020  T
Q  153 tatgcgatccaccacc 168  Q
    |||| |||| ||||||    
T  55050019 tatgagatctaccacc 55050004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 24183432 - 24183510
Alignment:
Q  56 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaa 135  Q
    |||||||||| ||| |||||||| |||||| |||||||  ||||||||| |||||| |||||||||||||||| ||||||    
T  24183432 ttatatgttgctca-catctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaa 24183510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 36697844 - 36697769
Alignment:
Q  49 atctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||| |||||||||||||| |||||||||| |||||| |||||||  | ||||||||||| |||| ||||||||||    
T  36697844 atctaacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacat 36697769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 26289997 - 26290128
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||| || ||| | | ||||| |||||||||||      
T  26289997 cacttatatgttactcaacatctactcttacatacaatgtg--actttaactcgcacttgacacattaatatttctccctaaagtaggagactctctgca 26290094  T
Q  153 tatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  26290095 tatgagatctaccaccataaaccaattctgcttc 26290128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 314412 - 314323
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 129  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || ||   |   |||||||||||| |||||||||||||||||||||    
T  314412 atatgagtcatctcacttatatgttattcaaaatctactcttctatccaccatagaattttaactcacgcttgacacattaacatctctt 314323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 35695134 - 35695054
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||  |||||||||||||||||| |||||||| ||||| || |||||  | | |||||||||||||||||||||||||    
T  35695134 tgagtcaaatcacttatatgttgttcagcatctactcttgca-tccatgtggaactctaactcacacttgacacattaacat 35695054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 42729464 - 42729545
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 123  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| || |||   |||||||||  |||||||||| ||||||    
T  42729464 atatgagtcatctcacttatatgtttctcaacatgtactattgcatacattgttgaattttaact--cacttgacacgttaaca 42729545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 56340350 - 56340282
Alignment:
Q  54 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 122  Q
    ||||||||||||||||||||||| |||||||| |||| ||  | ||||| ||||||||||||| |||||    
T  56340350 acttatatgttgttcaacatctattattgcatccaatatggaactttaaatcacacttgacacgttaac 56340282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 42757545 - 42757698
Alignment:
Q  15 ttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcatt--caatgtgttattttaactcacact 110  Q
    |||||||||| || |||||||||||  |||||| | ||||| || ||||||| ||||||||||||| ||||||   ||||||   | ||| ||||||| |    
T  42757545 ttcacccaaagtcctaagacattaggtatatga-taatctccctcatatgtttttcaacatctactcttgcatatccaatgttaaacttttactcacaat 42757643  T
Q  111 tgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacca 169  Q
    ||||||||||||||||||  |||||    ||||||||| |||| || ||||||||||||    
T  42757644 tgacacattaacatctctctattaa----gagactctccgtgtctgtgatccaccacca 42757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 316586 - 316508
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||| |||||||||||| |||| ||||||| || |||  ||||| | |||||||||| || |||||||||||||||    
T  316586 gtcatctgacttatatgttgctcaaaatctactctttcatctaatgtataattttaactcgcatttgacacattaacat 316508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 13918326 - 13918248
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||||| |||||||||||| || ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  13918326 gtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 13918248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 11560299 - 11560199
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    |||||||||| ||||| |||| ||| || |||| |||||| |||||| | | |||||||||| | |||||||||||||||||| | |||||| || ||||    
T  11560299 gtcatctcacgtatatattgt-caatatatactcttgcatccaatgtataagtttaactcacccatgacacattaacatctctcccttaagtgtgggact 11560201  T
Q  146 ct 147  Q
    ||    
T  11560200 ct 11560199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 14266234 - 14266310
Alignment:
Q  16 tcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaat 90  Q
    |||||| ||||||||||| |||||  ||||| |||||||||||||| ||||||||||  ||||||||| ||| ||||    
T  14266234 tcaccctaaatcttaagaaattagttatatgggtcatctcacttatttgttgttcaaattctactatttcatccaat 14266310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 52543045 - 52543094
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    ||||||| |||||||||||||||| |||||||| | ||||||||||||||    
T  52543045 tttaacttacacttgacacattaatatctcttcctcaagtatgagactct 52543094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 42756774 - 42756925
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    |||| |||| ||||| |||||| |||||||| ||||  ||||  ||||| | |||||||||||| |||| || || | |||||| ||||||   | |||     
T  42756774 gacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgcatccaatgtagaagtttt 42756873  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 153  Q
    |||||||  |||||||||||||||||| | |||||| ||||| |||| ||||    
T  42756874 actcacaaatgacacattaacatctctcccttaagtgtgagattctccgtgt 42756925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 9694408 - 9694459
Alignment:
Q  21 caaaatcttaagacattagat-atgagtcatctcacttatatgttgttcaac 71  Q
    ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  9694408 caaaatcttaagacatttgattatgagtcatctcacttataagatgttcaac 9694459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 22681272 - 22681319
Alignment:
Q  103 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
    |||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  22681272 ctcacacttgacacattaacatttattccttaagtacgagactctctg 22681319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 39977281 - 39977246
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactatt 81  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39977281 gtcatctcacttatatgttattcaacatctactatt 39977246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 48683248 - 48683181
Alignment:
Q  61 tgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 128  Q
    ||||| ||||| || ||| |||| |||||||||  | ||||||||||| |||||||||||||||||||    
T  48683248 tgttgctcaacttccactcttgctttcaatgtgaaactttaactcacatttgacacattaacatctct 48683181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 313155 - 313117
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  313155 atatgagtcatataacttatatgttgttcaacatctact 313117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 6553372 - 6553334
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  6553372 atatgagtcatataacttatatgttgttcaacatctact 6553334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 4237132 - 4237193
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 128  Q
    |||||||| ||| ||||||||||||||  ||||||||| |||| |  |||||||||||||||    
T  4237132 tcaacatccactcttgcattcaatgtggaattttaacttacacgtagcacattaacatctct 4237193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 13230986 - 13230882
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    ||||||||| ||||||||   |||||||||||||||| ||   |||||  ||||||| ||||| || |||  ||||||| ||||| |||||| |||||||    
T  13230986 gtcatctcatttatatgtgtctcaacatctactattgtatcttatgtgaaattttaaatcacaattaacattttaacatatcttccttaagtgtgagact 13230887  T
Q  146 ctctg 150  Q
     ||||    
T  13230886 gtctg 13230882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 13668194 - 13668274
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    |||||||||||||||||||  ||||||  | ||||| ||| | ||||||||||||||| ||||  | |||| |||||||||    
T  13668194 tcaacatctactattgcatgtaatgtggaactttaaatcataattgacacattaacatatctttctcaagtttgagactct 13668274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 13681051 - 13681131
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    |||||||||||||||||||  ||||||  | ||||| ||| | ||||||||||||||| ||||  | |||| |||||||||    
T  13681051 tcaacatctactattgcatgtaatgtggaactttaaatcataattgacacattaacatatctttctcaagtttgagactct 13681131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 13919377 - 13919329
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactc 146  Q
    ||||| |||||||||||||||| |||||||| | |||||| ||||||||    
T  13919377 tttaattcacacttgacacattgacatctctccgttaagtttgagactc 13919329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 42797242 - 42797532
Alignment:
Q  8 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 105  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  42797242 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaactc 42797341  T
Q  106 acacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    ||||||||||||||||||||| |  |||||| |||||||||||||| | ||| ||||||||||||  |||||||||||| ||||||||||||||||| |     
T  42797342 acacttgacacattaacatctttctattaagcatgagactctctgtatctgctatccaccaccacagaccacttccgctccccaaaaatgttgaagcaga 42797441  T
Q  206 tacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 298  Q
    || ||||||| |||||||||||| | ||||| |||||||||||||||  ||||||||||||||||||| |||||||| ||||| |||||||||    
T  42797442 tatgatatcaccattgagacttacgaggagcaaacacttgtgtgaat--cgacacattgcagaaagagcaatcacacgagtgataatgatgtc 42797532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 23141752 - 23142042
Alignment:
Q  8 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 105  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23141752 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 23141851  T
Q  106 acacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    | ||||||||| |||||||||||  |||||| |||||||||||||| | ||| ||||||||||||| |||||||||||| ||| ||||||||||||| |     
T  23141852 atacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttccgctccccgaaaatgttgaagcaga 23141951  T
Q  206 tacgatatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    || ||||||| ||||||||||||| ||||||||||| |||||||||||  |||||||||||| |||||| |||||||| ||||| ||||||||    
T  23141952 tatgatatcaccattgagacttatgggggagccaacgcttgtgtgaat--cgacacattgcataaagagcaatcacacgagtgataatgatgt 23142042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 13756666 - 13756376
Alignment:
Q  8 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 105  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  13756666 tcacaacttcacccaaaatcttaagacattagatacatgagtcatttcacttaaatgtttctcaacatctactattgcattcaatgtgttattttaactc 13756567  T
Q  106 acacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    ||||||||||||||||||| |||  |||||| |||||||||| ||| | | | ||||||||||||| |||||||||||| ||||||||||||||||| |     
T  13756566 acacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttccgctccccaaaaatgttgaagcaga 13756467  T
Q  206 tacgatatcaacattgagacttatg-gggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    || ||||||| ||||| |||||||| || ||||||| |||||||||||  ||||||||||||||||||| |||||||||||||| ||||||||    
T  13756466 tatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaat--cgacacattgcagaaagagcaatcacacaagtgataatgatgt 13756376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 10901395 - 10901547
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  10901395 gacatcacaacttcacccaaaatcttaacacattagatatacgagtcatctcacttgtatgttactcaacatctactattgcattcaatgtgttatttta 10901494  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgta 154  Q
    ||||||| |||| |||||||||||||| ||||||||| ||||||||| |||||    
T  10901495 actcacatttgatacattaacatctctccattaagtacgagactctccgtgta 10901547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 298
Target Start/End: Original strand, 21588824 - 21589082
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactat-tg-cattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 138  Q
    |||||||||||||||| ||||||| ||||| ||||| ||| || ||||||||||||||||||||| ||| |||||||||||| |||||||  ||||| ||    
T  21588824 tatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttattttaacccacccttgacacattaccatctctcaattaaata 21588923  T
Q  139 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagcc 237  Q
     || |||||  ||||   ||||||||||||||||| ||||| |||| |||| || ||||||||||  || ||||||| |||||  |||||  |||||| |    
T  21588924 cgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttgaagcgtatatgatatcaccattggaacttacgggggagac 21589023  T
Q  238 aacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 298  Q
    ||||||||||||| |  |||||||||||||||| |  || |||||| ||||||||||||||    
T  21589024 aacacttgtgtgatt--cgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc 21589082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 30254661 - 30254504
Alignment:
Q  1 atggacatcacaacttcacccaaaatcttaagacattag--atatgagtcat--ctcactt-atatgttgttcaacatctactattgcattcaatgtgtt 95  Q
    |||||||||||| ||||||||||| ||||  ||||||||  ||||||||| |  ||||||| |||||||||||||||| |||  ||||||  | |||       
T  30254661 atggacatcacatcttcacccaaagtcttttgacattaggtatatgagtcgtgtctcactttatatgttgttcaacatatacgtttgcatctattgtcga 30254562  T
Q  96 attttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 153  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||    
T  30254561 attttaactcacatttgacacattaacatctttccgttaagtatgagactctccgtgt 30254504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 45247875 - 45247765
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||| ||   | |||||||||||||||||| ||||| |||||| | |||||| |    
T  45247875 atatgagtcatctcatttatattttgttcaacacatacttttgcattcaacgtagaactttaactcacacttgacatattaaaatctctcccttaagtgt 45247776  T
Q  140 gagactctctg 150  Q
    |||||||||||    
T  45247775 gagactctctg 45247765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 23686732 - 23686598
Alignment:
Q  18 acccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 115  Q
    |||||||| |||||| ||| ||||||   |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||||||    
T  23686732 acccaaaaccttaagtcatcagatatatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgaca 23686633  T
Q  116 cattaacatctcttcattaagtatgagactctctg 150  Q
     |||||||||||| | |||||| ||| ||||||||    
T  23686632 tattaacatctctcccttaagtgtgatactctctg 23686598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 40885851 - 40885741
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    |||||||| || |||||||||||||||||||||| || |||||||| |||||||  ||||||| ||||||||||||  ||||| ||| |   | ||||||    
T  40885851 atatgagttatatcacttatatgttgttcaacatttattattgcatccaatgtgaaattttaaatcacacttgacatgttaacctctttctctcaagtat 40885752  T
Q  140 gagactctctg 150  Q
    |||||||||||    
T  40885751 gagactctctg 40885741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 23683214 - 23683105
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | |||||||||||||| || ||| |   | ||||||    
T  23683214 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacattgacctctttatctcaagtat 23683115  T
Q  140 gagactctct 149  Q
    ||||||||||    
T  23683114 gagactctct 23683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 38290658 - 38290486
Alignment:
Q  14 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacactt 111  Q
    ||||||| ||| ||||||| ||||||  |||| ||||| | |||||||||||| || ||||| | || ||||||  |||||   ||| ||||||||||||    
T  38290658 cttcaccaaaagtcttaaggcattaggtatatcagtcaacccacttatatgtttttaaacattttctcttgcatgtaatgtaaaattataactcacactt 38290559  T
Q  112 gacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgct 184  Q
    ||||||||||||||||||  | || | ||||||||||| || ||| ||||||| |||| || ||||| |||||    
T  38290558 gacacattaacatctctttttcaattgtgagactctctatgcatgtgatccactaccatgagccactcccgct 38290486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 16313248 - 16313379
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  16313248 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 16313345  T
Q  153 tatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  16313346 tatgagatctaccaccataaaccaattctgcttc 16313379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 17888130 - 17888052
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||||||||||||||||||||| ||||||| || ||| || ||| | || |||||||||| |||||||||||||||    
T  17888130 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 17888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 34800903 - 34800772
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  34800903 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 34800806  T
Q  153 tatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  34800805 tatgagatctaccaccataaaccaattctgcttc 34800772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 41527027 - 41527140
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   |||||||||||||||||||||||||| |||||||  | |||| |    
T  41527027 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagttt 41527126  T
Q  140 gagactctctgtgt 153  Q
    |  |||||||||||    
T  41527127 gcaactctctgtgt 41527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 13759007 - 13758881
Alignment:
Q  18 acccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 115  Q
    |||||||| ||||||||||||| |||  | ||||||||||| |||||||||| |||| ||||| |||||| |||     ||  ||||||||||||||| |    
T  13759007 acccaaaaccttaagacattaggtatacgggtcatctcactaatatgttgtttaacaactactcttgcatccaa-----taggttaactcacacttgata 13758913  T
Q  116 cattaacatctcttcattaagtatgagactct 147  Q
    |||||||||||||   |||| |||||||||||    
T  13758912 cattaacatctctcttttaactatgagactct 13758881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 367319 - 367212
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | |||||||||||||||||| |||||||| ||| | |||||| |    
T  367319 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgt 367220  T
Q  140 gagactct 147  Q
    || |||||    
T  367219 gatactct 367212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 357599 - 357546
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtg 93  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  357599 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtg 357546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 16220246 - 16220354
Alignment:
Q  22 aaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    |||| |||||||||||||||  || |||| || ||||||||| |||||||| || ||||||| |||||||| | | ||||||||| |||| ||  |||||    
T  16220246 aaaagcttaagacattagatgtattagtcttcccacttatattttgttcaatatatactatttcattcaatttataattttaacttacacatggtacatt 16220345  T
Q  120 aacatctct 128  Q
    |||||||||    
T  16220346 aacatctct 16220354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 16250039 - 16250169
Alignment:
Q  54 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 153  Q
    |||||||||||  |||||||||||| || ||| |||||||  | |||| ||| |||||||||||||||||| ||||| | ||||| |||| ||||||  |    
T  16250039 acttatatgttactcaacatctactcttacatccaatgtg--actttatctcgcacttgacacattaacatttcttcctcaagtacgagattctctgcat 16250136  T
Q  154 atgcgatccaccaccacgaaccacttccgcttc 186  Q
    ||| |||| |||||||  ||||| ||| |||||    
T  16250137 atgagatctaccaccataaaccaattctgcttc 16250169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 26622857 - 26622938
Alignment:
Q  44 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta-ttttaactcacacttgacacattaacat 124  Q
    ||||||||||||||||||||||||||||| ||||||||  ||| |||||   | || ||||||||||||||||||| |||||    
T  26622857 gagtcatctcacttatatgttgttcaacacctactattttatttaatgttagacttataactcacacttgacacatcaacat 26622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 37251164 - 37251278
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  37251164 cacttatatgttactcaatatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 37251261  T
Q  153 tatgcgatccaccacca 169  Q
    |||| |||| |||||||    
T  37251262 tatgagatctaccacca 37251278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 19263334 - 19263432
Alignment:
Q  27 cttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||||  ||||||||||| |||||||| |||||||||||   |||| |||||| ||||| |  |  ||||||||||||||||||||||||||    
T  19263334 cttaagacattaggtatatgagtcatatcacttatttgttgttcaacggttactcttgcatccaatgcgaga-cttaactcacacttgacacattaacat 19263432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 40260529 - 40260477
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
    ||||||| | ||||||||||||||||||||||| | |||||||||||||||||    
T  40260529 tttaacttatacttgacacattaacatctcttcctcaagtatgagactctctg 40260477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 8358803 - 8358881
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||||||||||||||||||||| ||||||| || |||  | ||| | |  |||||||||| |||||||||||||||    
T  8358803 gtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtataacgttaactcacatttgacacattaacat 8358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 13758119 - 13758078
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactatt 81  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  13758119 atatgagtcatctcacgtatatgttattcaacatctactatt 13758078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 15342301 - 15342402
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| ||||||| || |||| ||| |||    
T  15342301 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15342400  T
Q  146 ct 147  Q
    ||    
T  15342401 ct 15342402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 15431366 - 15431467
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| ||||||| || |||| ||| |||    
T  15431366 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15431465  T
Q  146 ct 147  Q
    ||    
T  15431466 ct 15431467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 15522670 - 15522771
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| ||||||| || |||| ||| |||    
T  15522670 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15522769  T
Q  146 ct 147  Q
    ||    
T  15522770 ct 15522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 8357693 - 8357749
Alignment:
Q  96 attttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    |||||||||||||||||||||||| |||| ||  |||||||| ||||||||| ||||    
T  8357693 attttaactcacacttgacacattgacatttcaacattaagtttgagactctttgtg 8357749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 42797103 - 42797206
Alignment:
Q  21 caaaatcttaagacattaga--tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 118  Q
    ||||| ||||||||||| ||  ||| ||||||||||||||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  42797103 caaaaccttaagacattggaaatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataactttaaatgacacgtgacacat 42797202  T
Q  119 taac 122  Q
    ||||    
T  42797203 taac 42797206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 17871311 - 17871244
Alignment:
Q  55 cttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 122  Q
    ||||||||||| |||| || |||| || ||||||||||   | |||||||||||||||||||||||||    
T  17871311 cttatatgttgctcaatatttactcttacattcaatgtaaaactttaactcacacttgacacattaac 17871244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 18953362 - 18953425
Alignment:
Q  60 atgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 123  Q
    ||||| ||||||||||||| |||||| ||||||   ||||||| ||||| ||||||||||||||    
T  18953362 atgtttttcaacatctactcttgcatccaatgtcaaattttaattcacagttgacacattaaca 18953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 21586497 - 21586532
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactatt 81  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21586497 gtcatctcacttatatgttattcaacatctactatt 21586532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 23525268 - 23525197
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacca 169  Q
    |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||  |||| |||| |||||||    
T  23525268 tttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgcatatgagatctaccacca 23525197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 45528310 - 45528252
Alignment:
Q  14 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaa 70  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| |||||||||| ||||    
T  45528310 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgctcaa 45528252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 14375117 - 14374999
Alignment:
Q  57 tatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatg 156  Q
    ||||||||| |||||||||||| |||||  |||| ||  | ||| |||| || |||| | ||||||||||||||||||||| | | | |||| || || |    
T  14375117 tatatgttggtcaacatctacttttgcacacaatatgaaagttttactctcaattgataaattaacatctcttcattaagtgtcacagtctccgtatacg 14375018  T
Q  157 cgatccaccaccacgaacc 175  Q
     |||||||||||| |||||    
T  14375017 tgatccaccaccaagaacc 14374999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 14376166 - 14376132
Alignment:
Q  115 acattaacatctcttcattaagtatgagactctct 149  Q
    |||||||||| ||||||||||||||||||||||||    
T  14376166 acattaacatatcttcattaagtatgagactctct 14376132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 35226668 - 35226758
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttccc 188  Q
    ||||||| | |||||||| | |||||| ||||| |||||||||||||||| ||  |||| |||| |||| || |||||||| | |||||||    
T  35226668 tttaactaatacttgacatactaacatttcttccttaagtatgagactctttgcatatgtgatctaccatcatgaaccactccagcttccc 35226758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 758151 - 758098
Alignment:
Q  81 tgcattcaatgtgttattttaactcacacttgacacattaacatctcttcatta 134  Q
    |||||||||||||  ||||||||| |||||||||||||||| || ||| |||||    
T  758151 tgcattcaatgtggaattttaacttacacttgacacattaaaatatctccatta 758098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 5685916 - 5685867
Alignment:
Q  100 taactcacacttgacacattaacatctcttcattaagtatgagactctct 149  Q
    |||||||||| |||||||||||||||||| | |||||| ||||| |||||    
T  5685916 taactcacacatgacacattaacatctctcctttaagtgtgagattctct 5685867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 41787087 - 41787116
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaa 70  Q
    ||||||||||||||||||||||||||||||    
T  41787087 tatgagtcatctcacttatatgttgttcaa 41787116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 45245107 - 45245034
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatcta 76  Q
    |||| |||| |||||||  ||| |||||| |||||  |||||||| || |||||||||||||||||||||||||    
T  45245107 gacaccacatcttcaccttaaaccttaagtcattaatatatgagttatatcacttatatgttgttcaacatcta 45245034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4072945 - 4072889
Alignment:
Q  21 caaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctac 77  Q
    ||||| ||||||||||||| ||||  || ||| |||||||||||| |||||||||||    
T  4072945 caaaaccttaagacattagttatggatcttcttacttatatgttgctcaacatctac 4072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 23141613 - 23141716
Alignment:
Q  21 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 118  Q
    ||||| ||||||||||| |||||   ||||||||||||| ||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  23141613 caaaaccttaagacattggatatattagtcatctcacttgtatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 23141712  T
Q  119 taac 122  Q
    ||||    
T  23141713 taac 23141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 45527389 - 45527334
Alignment:
Q  25 atcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||||||| |||  || |||||| |||||||||||| ||||||||||||    
T  45527389 atcttaagacattaggtatacgactcatctaacttatatgttggtcaacatctact 45527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 38015885 - 38016177
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38015885 gacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgttatttta 38015984  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaag 201  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| | |||||   |||||||||||||||||||||||||| | | ||||||||||||||    
T  38015985 actcacacttgacacattaacatctctccatcaagtatgagact-tttgtgtccacgatccaccaccacgaaccacttccgttccacaaaaatgttgaag 38016083  T
Q  202 cgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    ||| || ||||||  ||||| |||||||||||||||| |||||||||||||  ||| | ||||||||||||| |||||||||||| | ||||||||    
T  38016084 cggatatgatatcgccattgggacttatggggagccagcacttgtgtgaat--cgatatattgcagaaagagcaatcacacaagtaataatgatgt 38016177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 9012711 - 9012812
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||| ||||  ||||||||| |||||||||||||||| || ||| |||||||| |||||||    
T  9012711 gtcagctcacttatatgttgctcaacatctactcttgaattcattgtgaaattttaactaacacttgacacattaatatgtctccattaagtgtgagact 9012810  T
Q  146 ct 147  Q
    ||    
T  9012811 ct 9012812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 9025041 - 9024952
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 129  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | | | ||||||||||||||||||||||||||||||||||    
T  9025041 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctctt 9024952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 298
Target Start/End: Original strand, 33014000 - 33014122
Alignment:
Q  175 cacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagccaacacttgtgtgaatgacgacacattgcagaaagag 273  Q
    |||||||||| ||||||||||||||||||  || ||||||| ||||| ||||||   ||||| |||||||||||||| |  |||||||||||||||| |     
T  33014000 cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttacatgggagacaacacttgtgtgatt--cgacacattgcagaaaaaa 33014097  T
Q  274 taatcacacaagtgagaatgatgtc 298  Q
     || |||||||||||||||||||||    
T  33014098 caaccacacaagtgagaatgatgtc 33014122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 27594522 - 27594641
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||||||  ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| ||||||||||||||||  | |||||    
T  27594522 gacaccacatcttcaccttaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcattcaatgtggaactttaa 27594621  T
Q  103 ctcacacttgacacattaac 122  Q
     ||||||||||||| |||||    
T  27594622 atcacacttgacacgttaac 27594641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 20966207 - 20966121
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 126  Q
    ||||||||||| | | |||||||| |||||||||||| |||||||| |||||||  | ||||| |||||||||||||||||||||||    
T  20966207 atatgagtcatataatttatatgtcgttcaacatctattattgcatccaatgtggaactttaaatcacacttgacacattaacatct 20966121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 33013892 - 33013981
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactat-tgca-ttcaatgtgttattttaactcacacttgacacattaacatctct 128  Q
    |||||||||||||||| ||||||||||||| || || ||| || | ||||||||||||||||||| |||||||||||||||| |||||||    
T  33013892 tatgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgttattttaacccacacttgacacattagcatctct 33013981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 8128432 - 8128563
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  8128432 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 8128529  T
Q  153 tatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  8128530 tatgagatctaccaccataaaccaattctgcttc 8128563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 19910596 - 19910682
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 126  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||| |||||||  ||||| || |||| ||| | |||||||||||    
T  19910596 atatgactcatctcacttatatgttgttcaatatctactcttgcatacaatgtggaattttgacacacatttgtcgcattaacatct 19910682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 29865827 - 29866004
Alignment:
Q  9 cacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactca 106  Q
    |||| |||||||| ||| |||| || |||||  |||||| ||||  ||||||||||||  |||||||| ||| || ||| |||||||  | ||||||||     
T  29865827 cacatcttcaccccaaaccttatgaaattaggtatatgaatcataacacttatatgttactcaacatcaactcttacatccaatgtg--actttaactcg 29865924  T
Q  107 cacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||||||||||||||||| ||||| | | ||| |||||||||||  |||| |||| |||||||  ||||| ||| |||||    
T  29865925 cacttgacacattaacatttcttcctcatgtacgagactctctgcatatgagatctaccaccataaaccaattctgcttc 29866004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 4062231 - 4062136
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||    
T  4062231 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctg 4062136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 19320306 - 19320433
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagata-tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||| ||| ||| ||||||||||||| || || ||||| ||||||||||||||||||||||| ||| | ||||  || |||  | |||||    
T  19320306 gacaccacatcttcgccctaaaccttaagacattaggtagtgggtcatatcacttatatgttgttcaacatccactgtcgcatctaacgtgcaactttaa 19320405  T
Q  103 ctcacacttg--acacattaacatctct 128  Q
    ||| ||||||  | ||||||||||||||    
T  19320406 ctcgcacttgatatacattaacatctct 19320433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 10176006 - 10175893
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||| | ||||||||||| ||||||||||||||  ||||| |||||| ||||||| ||||  ||||||| || | |||||| | | |||  ||||||    
T  10176006 gacatcatatcttcacccaaagtcttaagacattagatatatgggtcatcacacttatgtgttactcaacatataatcttgcatac-acgtgaaatttta 10175908  T
Q  102 actcacacttgacac 116  Q
     ||||||||||||||    
T  10175907 gctcacacttgacac 10175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 7332935 - 7333030
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  |||| ||||| |||||||||||||||||| ||| | | ||||| || ||||||||    
T  7332935 cacttatatgttactcaatatctactcttacatccaatgtg--atttgaactcgcacttgacacattaacatttctccctcaagtacgaaactctctg 7333030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 11770399 - 11770465
Alignment:
Q  82 gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctc 148  Q
    |||| |||||||| | ||||| ||||| | ||||||||||| ||||| | |||||||||||||||||    
T  11770399 gcatccaatgtgtaactttaaatcacattcgacacattaacttctctcccttaagtatgagactctc 11770465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 33009855 - 33009903
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||||||    
T  33009855 tttaactcacacatgacacattaacatctctt-tttaagtgtgagactct 33009903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 2260855 - 2260887
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttc 130  Q
    |||||||||||||||||||||||||||| ||||    
T  2260855 tttaactcacacttgacacattaacatcacttc 2260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 43387052 - 43387344
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  43387052 gacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatgtgtaatttta 43387151  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaag 201  Q
    |||||||||||||||||||||||||||   ||||||| ||||||||| |||| ||||||||| |||||||||||||||  ||| || ||||||||||||     
T  43387152 actcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccacttttgctcccaaaaaatgttgaaa 43387250  T
Q  202 cgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 297  Q
    ||| || ||||||| ||||| |||||||||||| |||||||||||||||||   |||||| || ||||| || |||||||||||||| ||| ||||    
T  43387251 cggatatgatatcaccattgggacttatggggatccaacacttgtgtgaat--tgacacaatgtagaaaaagcaatcacacaagtgaaaataatgt 43387344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 178
Target Start/End: Original strand, 22636310 - 22636447
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatg 140  Q
    ||||||||| ||| ||||||||| | |||||||||||| |||||||||| ||   |||||||||||||||||| | |||||||||||| ||||||||||     
T  22636310 tatgagtcacctcccttatatgtagctcaacatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatctctccattaagtata 22636409  T
Q  141 agactctctgtgtatgcgatccaccaccacgaaccact 178  Q
    ||||||||| ||| || ||||||| |||| ||||||||    
T  22636410 agactctctatgtttgggatccacaaccaagaaccact 22636447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 47783270 - 47783134
Alignment:
Q  14 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacactt 111  Q
    |||||||| ||| |||||| |||||   ||||||||||| |||||||||||||||| ||||  |||| |||||  |||||||  | ||||||||||||||    
T  47783270 cttcaccctaaaccttaaggcattatgtatatgagtcatatcacttatatgttgttaaacaattactcttgcagccaatgtgaaactttaactcacactt 47783171  T
Q  112 gacacattaacatctcttcattaagtatgagactctc 148  Q
    ||||||||||||||| ||| |||| || |||||||||    
T  47783170 gacacattaacatctattccttaaatacgagactctc 47783134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 20306724 - 20306820
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  20306724 atatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 20306820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 40946611 - 40946518
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  40946611 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 40946518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 1992514 - 1992421
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  | |||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  1992514 tgagtcatctcacttaaatgtttctcataa-ctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 1992421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 17006492 - 17006623
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  17006492 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 17006589  T
Q  153 tatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  17006590 tatgagatctaccaccataaaccaattctgcttc 17006623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 22541995 - 22541885
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||| || |||||||||||||  |||||| |    
T  22541995 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaaattagaactttaactcacacttggcatattaacatctctttcttaagtgt 22541896  T
Q  140 gagactctctg 150  Q
    || ||||||||    
T  22541895 gatactctctg 22541885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 30001736 - 30001829
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||| ||||||||||||||||||||||| ||||||||    
T  30001736 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaacttacacttgacacattaacatctctccattaagt 30001829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 15524807 - 15524702
Alignment:
Q  45 agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagac 144  Q
    |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||| || |||||||||||| | |||||| ||| ||    
T  15524807 agtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttggcatattaacatctctcccttaagtgtgatac 15524708  T
Q  145 tctctg 150  Q
    ||||||    
T  15524707 tctctg 15524702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 21469816 - 21469893
Alignment:
Q  42 atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  21469816 atgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 21469893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 34159599 - 34159485
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  34159599 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 34159502  T
Q  153 tatgcgatccaccacca 169  Q
    |||| |||| |||||||    
T  34159501 tatgagatctaccacca 34159485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 49879228 - 49879097
Alignment:
Q  22 aaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    |||| ||||| |||||||||  || |||| || |||||||| ||||||||| || ||||||| |||||||| | | |||||||||||||| ||  |||||    
T  49879228 aaaagcttaaaacattagatgtattagtcttcccacttatacgttgttcaatatatactatttcattcaatttataattttaactcacacatggtacatt 49879129  T
Q  120 aacatctcttcattaagtatgagactctctgt 151  Q
    ||||||||| | |||| | | |||||||||||    
T  49879128 aacatctctcccttaaatgtaagactctctgt 49879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 7844572 - 7844719
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||||| | ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| ||||||   | |||||    
T  7844572 gacaccacatcttcactctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtagaactttaa 7844671  T
Q  103 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
     ||||| ||||||| ||||| ||| |   | |||||||||||||||||    
T  7844672 atcacaattgacacgttaacctctttctctcaagtatgagactctctg 7844719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 19065744 - 19065823
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  19065744 atatgggtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 19065823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 19113634 - 19113713
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  19113634 atatgggtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 19113713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 22538474 - 22538395
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||||||||| |||||||||| |||||||| || || |||||||| |||||||  | ||||| | ||||||||||||||    
T  22538474 atatgagtcatatcacttatatattgttcaatatttattattgcatccaatgtggaactttaaataacacttgacacatt 22538395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 3838181 - 3838251
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 168  Q
    ||||||| |||||||||||||||||||||| || | |||||||||||||| ||| | || |||| ||||||    
T  3838181 tttaacttacacttgacacattaacatctcgtcctcaagtatgagactctttgtatctgtgatctaccacc 3838251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 43385111 - 43385197
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 126  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||  | | |   | ||||||||| |||||||| ||||||||||    
T  43385111 atatgagtcatctcacatatatgttattcaacatctactattccatcaattctagaactttaactcatacttgacatattaacatct 43385197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 8313411 - 8313508
Alignment:
Q  71 catctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 168  Q
    |||||||| |||||| ||||||   |||||||||  ||||| | |||||||||||||| |||||||| | |||||||| ||||  | |||||||||||    
T  8313411 catctactcttgcatacaatgtaaaattttaactttcacttaatacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacc 8313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 3981705 - 3981637
Alignment:
Q  56 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||| |||||||||||||||| |||||||||||||   | ||||| | |||||| ||||||||||||    
T  3981705 ttatatattgttcaacatctactcttgcattcaatgtaaaactttaatttacactttacacattaacat 3981637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 129
Target Start/End: Complemental strand, 3982760 - 3982729
Alignment:
Q  98 tttaactcacacttgacacattaacatctctt 129  Q
    ||||||||||||||||||||||||||||||||    
T  3982760 tttaactcacacttgacacattaacatctctt 3982729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 45919473 - 45919511
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  45919473 atatgagtcatataacttatatgttgttcaacatctact 45919511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 49880615 - 49880577
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  49880615 atatgagtcatataacttatatgttgttcaacatctact 49880577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 16852024 - 16851963
Alignment:
Q  74 ctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaa 135  Q
    ||||| |||||| |||||||  ||||||||| |||||  |||||||||||||||| ||||||    
T  16852024 ctactcttgcatacaatgtgaaattttaacttacactgaacacattaacatctctccattaa 16851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 19098995 - 19099067
Alignment:
Q  18 acccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattca 88  Q
    |||||||| |||||| ||| ||||||   |||||||||| |||||| ||||||||||| |||| |||||||||    
T  19098995 acccaaaaccttaagtcatcagatatatcagtcatctcatttatattttgttcaacatatacttttgcattca 19099067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 43385727 - 43385824
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgaga 143  Q
    ||||||||| ||||||||   |||||||||||| ||| ||| ||||||  | ||||| ||||| ||||||  ||||||| ||||| |||||| |||||    
T  43385727 gtcatctcatttatatgtgtctcaacatctactgttgtatttaatgtggaactttaaatcacaattgacattttaacatatcttccttaagtgtgaga 43385824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 26531519 - 26531623
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    |||| |||| ||||||||| || ||||| | |||||||||  |||||||||||||||||  || |||  |||||||||||||||  ||||||  | ||||    
T  26531519 gacaccacatcttcacccataaccttaatatattagatatatgagtcatctcacttata--tttttctgcatctactattgcatctaatgtgaaacttta 26531616  T
Q  102 actcaca 108  Q
    |||||||    
T  26531617 actcaca 26531623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 1599808 - 1599546
Alignment:
Q  12 aacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacac 109  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1599808 aacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacac 1599709  T
Q  110 ttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacg 209  Q
    |||||||||||||||||||  |||||| |||||||||||||| | ||| ||||||||||||  |||||||||||| || ||||||||||||||   || |    
T  1599708 ttgacacattaacatctctctattaagcatgagactctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatg 1599609  T
Q  210 atatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagag 273  Q
    |||||| | ||| ||||||| |||||||||| ||||||||||||  |||||||||||||||||||    
T  1599608 atatcacctttgggacttatgggggagccaatacttgtgtgaat--cgacacattgcagaaagag 1599546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 292
Target Start/End: Complemental strand, 26894961 - 26894748
Alignment:
Q  78 tattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccac 177  Q
    |||||||| |||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||| || |||| ||| ||||||||||| |||||||    
T  26894961 tattgcatccaatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccac 26894862  T
Q  178 ttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagacttatgggg-agccaacacttgtgtgaatgacgacacattgcagaaagagtaa 276  Q
    |||| || ||| |||||||||||| || ||  ||||||  |||| ||||||||||| |||||||| |||||||||| || ||||||||||||||||| ||    
T  26894861 ttccactcccctaaaatgttgaagtggatattatatcattattgggacttatggggtagccaacagttgtgtgaat-ac-acacattgcagaaagagaaa 26894764  T
Q  277 tcacacaagtgagaat 292  Q
    |||||||| |||||||    
T  26894763 tcacacaaatgagaat 26894748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 29214239 - 29214433
Alignment:
Q  7 atcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaact 104  Q
    |||||| ||||| ||||| |||||||||| |||  |||||||||||||||||| ||||||||||||||  | || || ||| |||||||  |||||||||    
T  29214239 atcacatcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgtatgttgttcaacaattgctttttcatacaatgtggaattttaact 29214338  T
Q  105 cacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaa 200  Q
     | |||| || | ||||||| |||||||||||| |||  ||||| ||||  | |||||||||||| ||||||| |||||| ||| | |||||||||    
T  29214339 taaacttaactcgttaacatatcttcattaagtgtgatgctctccgtgtgggtgatccaccaccaagaaccac-tccgctcccccacaatgttgaa 29214433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 31737206 - 31737288
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 122  Q
    |||||| |||| |||||| |||||||||||||||||||| |||||| |||||||  ||||||||||||| |||||||||||||    
T  31737206 atatgaatcatatcacttgtatgttgttcaacatctactcttgcatccaatgtgaaattttaactcacaattgacacattaac 31737288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 2976805 - 2976645
Alignment:
Q  20 ccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacaca 117  Q
    ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||||||||| | || ||| |||||||   |||||||||||||||||||||    
T  2976805 ccaaagtcttaagacatgaggtatatgtgtcatctcacttacatgttgttcaacatctattctttcatacaatgtgaagttttaactcacacttgacaca 2976706  T
Q  118 ttaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccact 178  Q
     ||| || |||| || |||| | |||||||| | ||| | |||| ||||| | ||||||||    
T  2976705 ataatatttctttatcaagtgttagactctccgcgtaagtgatctaccacaaagaaccact 2976645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 33350293 - 33350372
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||  | ||||| | ||||||||||||||    
T  33350293 atatgagtcatatcacttatatattgttcaacatttactattgcattcaatgtggaactttaaataacacttgacacatt 33350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 7428479 - 7428572
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  7428479 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 7428572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 21984261 - 21984182
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  21984261 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 21984182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 21988918 - 21988808
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | |||||||||||||||||| |||||||| ||| | |||||| |    
T  21988918 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgt 21988819  T
Q  140 gagactctctg 150  Q
    || ||||||||    
T  21988818 gatactctctg 21988808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 11554357 - 11554469
Alignment:
Q  18 acccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 115  Q
    |||||||| ||||||||||||| ||  || ||||||||||| |||||||||| |||| |||||  ||||| ||||||   |  ||||||||||| |||||    
T  11554357 acccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgaca 11554456  T
Q  116 cattaacatctct 128  Q
    |||||||||||||    
T  11554457 cattaacatctct 11554469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 23410088 - 23410202
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  23410088 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 23410185  T
Q  153 tatgcgatccaccacca 169  Q
    |||| |||| |||||||    
T  23410186 tatgagatctaccacca 23410202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 4031618 - 4031518
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 145  Q
    ||||| |||||||||||||| |||||||| ||| ||  ||  ||||||  |  |||||||||  ||||||||||||||||||||| ||||||||||||||    
T  4031618 gtcatatcacttatatgttgctcaacatccactcttatatctaatgtggaaccttaactcac--ttgacacattaacatctcttccttaagtatgagact 4031521  T
Q  146 ctc 148  Q
    |||    
T  4031520 ctc 4031518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 4852919 - 4852809
Alignment:
Q  20 ccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacaca 117  Q
    |||||||||||||||||| | ||  || ||||||||||| |||||||||| |||| |||||  ||||| ||||||   |  ||||||||||| |||||||    
T  4852919 ccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgacaca 4852820  T
Q  118 ttaacatctct 128  Q
    |||||||||||    
T  4852819 ttaacatctct 4852809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 15878925 - 15878847
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||||| ||||||||||||||| ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  15878925 gtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 15878847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 16279074 - 16279167
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||| ||||||||||||||||||||| | ||||||||    
T  16279074 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaacttacacttgacacattaacatctgtccattaagt 16279167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 24175141 - 24175021
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatatgag--tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||| ||||||| ||| |||||| ||||||| ||| ||  ||||||||||||||||||| ||||||| || |||||||| || |     ||||||    
T  24175141 gacatcacatcttcaccaaaagtcttaa-acattaggtataagggtcatctcacttatatgttgctcaacatatattattgcatacattactgaatttta 24175043  T
Q  102 actcacacttgacacattaaca 123  Q
    | ||||||||||||||||||||    
T  24175042 attcacacttgacacattaaca 24175021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 20872556 - 20872442
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    |||||||||| |  |||||||||||| || ||| |||||||  | ||||||||||||||||||| ||||||| ||| | | ||||| |||||||||||      
T  20872556 cacttatatgctactcaacatctactcttacatccaatgtg--actttaactcacacttgacacgttaacatttctccctcaagtacgagactctctgca 20872459  T
Q  153 tatgcgatccaccacca 169  Q
    |||| |||| |||||||    
T  20872458 tatgagatctaccacca 20872442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 19660319 - 19660426
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    ||||||| ||| ||| ||||||||||||||||| ||||| ||| |||||||| |  | |||||||||||||| ||||| || ||||  |   ||||||||    
T  19660319 atatgaggcatatcatttatatgttgttcaacaactactcttggattcaatgaggaactttaactcacacttaacacactatcatccatctcttaagtat 19660418  T
Q  140 gagactct 147  Q
    ||||||||    
T  19660419 gagactct 19660426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 9449581 - 9449690
Alignment:
Q  22 aaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||||||||| |||||   ||||||||| ||||||||||||||| ||||| || ||||  | ||| ||||||   ||  ||||||||||||||||| ||    
T  9449581 aaaatcttaaggcattatgcatatgagtcttctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacacgtt 9449680  T
Q  120 aacatctctt 129  Q
    ||||||||||    
T  9449681 aacatctctt 9449690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 24398042 - 24397965
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctacta 79  Q
    ||||||||  ||||||||||||||||| ||||||||  |||| |||||||||| |||||||||| |||| || |||||    
T  24398042 gacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatacta 24397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 26895011 - 26894975
Alignment:
Q  7 atcacaacttcacccaaaatcttaagacattagatat 43  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26895011 atcacaacttcacccaaaatcttatgacattagatat 26894975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 26597589 - 26597684
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||| |||||| ||||||||| |   |||| |||| |||| | ||||||   |||||| ||||||||||||| |||||||||||| ||||||||    
T  26597589 atatgagtaatctcatttatatgttctg--acatatacttttgcttacaatgtagaattttagctcacacttgacatattaacatctctccattaagt 26597684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 28365786 - 28365724
Alignment:
Q  75 tactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||||||||| |||| |   ||||||||| ||||||||||||||||||||| | ||||||||    
T  28365786 tactattgcatacaatataaaattttaacttacacttgacacattaacatctgtccattaagt 28365724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 4852020 - 4851983
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctac 77  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  4852020 atatgagtcatctcacgtatatgttattcaacatctac 4851983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 11555259 - 11555296
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctac 77  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  11555259 atatgagtcatctcacgtatatgttattcaacatctac 11555296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 27436867 - 27436916
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    |||||||| ||||||||||||| |||||||| |||||||| | |||||||    
T  27436867 tttaactcgcacttgacacattgacatctctacattaagtttcagactct 27436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 1599951 - 1599848
Alignment:
Q  21 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 118  Q
    ||||| ||||||||||| |||||   |||||||||| |||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  1599951 caaaaccttaagacattggatatattagtcatctcatttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 1599852  T
Q  119 taac 122  Q
    ||||    
T  1599851 taac 1599848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 20874231 - 20874179
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
    ||||||||||| ||||||||||||||||||| | |||||  ||| ||||||||    
T  20874231 tttaactcacatttgacacattaacatctctcccttaagcgtgaaactctctg 20874179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 50171 - 50421
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||||||||||||||| |||| ||||||| |||||  |||| |||||  ||||||||||||| |||||||||||||||||||| |||||||||||    
T  50171 gacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactattgcattcaacgtgttatttta 50270  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaag 201  Q
    ||| |||||||||| |||||  ||||| ||||||||| |||||||||| |||  |||||||||||| |||||||||||| ||| || ||||| |||||||    
T  50271 actgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttctgctcccaaaaaacgttgaag 50370  T
Q  202 cgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaat 252  Q
    ||| || |||||||  |||  ||||| | | ||||||||||||||||||||    
T  50371 cggatatgatatcattattaggacttttcgagagccaacacttgtgtgaat 50421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 50331915 - 50332060
Alignment:
Q  8 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 105  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  50331915 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 50332014  T
Q  106 acacttgacacattaacatctcttcattaagtatgagactctctgt 151  Q
    |||||||||||||||||||||||  |||||| |||| |||||||||    
T  50332015 acacttgacacattaacatctctctattaagcatgaaactctctgt 50332060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 36096207 - 36095949
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 138  Q
    |||||||||||||| | ||||||| ||||| ||| | |||   ||||||||||| |||||||||| ||||||||||||||||  ||||||  ||||| ||    
T  36096207 tatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattattttaacccacacttgacacattacaatctctcaattaaata 36096108  T
Q  139 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagcc 237  Q
     || |||||  ||||  |||||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||| ||||| ||| ||  |||||  |    
T  36096107 cgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacatacgggggatac 36096008  T
Q  238 aacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 298  Q
    ||||||||||||| |  |||||||||||||||| |  || |||| | ||||||||||||||    
T  36096007 aacacttgtgtgatt--cgacacattgcagaaaaaacaaccacaaaggtgagaatgatgtc 36095949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 50332062 - 50332173
Alignment:
Q  185 tcccaaaaatgttgaagcgggtacgatatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacaca 283  Q
    |||||||||||||||||| | || ||||||| ||||| ||||||| ||||||||||| |||||||||||  || |||||||||||||||| ||||||||     
T  50332062 tcccaaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaat--cgtcacattgcagaaagagcaatcacacg 50332159  T
Q  284 agtgagaatgatgt 297  Q
    ||||| ||||||||    
T  50332160 agtgataatgatgt 50332173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 40056649 - 40056502
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||| |||| |||||||  ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  40056649 gacaccacatcttcaccataaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 40056550  T
Q  103 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
     ||||||||||||| ||||||||| |   | |||||||||||||||||    
T  40056549 atcacacttgacacgttaacatctttctctcaagtatgagactctctg 40056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 20934988 - 20935084
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||||||||||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||| |||||||||||||||||| ||||||||    
T  20934988 atatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgacacattaacatctctccattaagt 20935084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 298
Target Start/End: Original strand, 12746101 - 12746241
Alignment:
Q  156 gcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagccaacacttgtgtgaatga 254  Q
    ||||||||||||||| || || |||||||  |||||||||||||||||  || ||||||| ||||| || |||  |||||| |||||||||||||| |      
T  12746101 gcgatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattacaggggagacaacacttgtgtgatt-- 12746198  T
Q  255 cgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 298  Q
    ||| |||||||||| | || ||||||||||||||||||||||||    
T  12746199 cgatacattgcagaga-agcaatcacacaagtgagaatgatgtc 12746241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 14044376 - 14044290
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 126  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||||| |||| ||  | ||||| |||||||||||||||||||||||    
T  14044376 atatgggtcatatcacttaaatgttgttcaacatttactattgcatccaatatggaactttaaatcacacttgacacattaacatct 14044290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 17764216 - 17764120
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||| ||||||||||||||||| ||| ||| |||| | || | |||||||  ||||||||||||||||| ||||||||||||||| ||||||||    
T  17764216 atatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacattaacatctctccattaagt 17764120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 19065536 - 19065440
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||| ||||||||||||||||| ||| ||| |||| | || | |||||||  ||||||||||||||||| ||||||||||||||| ||||||||    
T  19065536 atatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacattaacatctctccattaagt 19065440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 30171174 - 30171283
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | |||||||||||||| || ||| |   | ||||||    
T  30171174 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacattgacctctttatctcaagtat 30171273  T
Q  140 gagactctct 149  Q
    ||||||||||    
T  30171274 gagactctct 30171283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 32976462 - 32976558
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||| |||||||||||||| ||||||||    
T  32976462 atatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgatacattaacatctctccattaagt 32976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 19817404 - 19817535
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  19817404 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 19817501  T
Q  153 tatgcgatccaccaccacgaaccacttccgcttc 186  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  19817502 tatgagatctaccaccataaaccaattctgcttc 19817535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 20779644 - 20779566
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||||||||||||||||||||| ||||||| || ||| || ||| | || |||||||||| |||||||||||||||    
T  20779644 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 20779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 42400377 - 42400470
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||| |||||||||||||||||| ||||||||    
T  42400377 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacgtgacacattaacatctctccattaagt 42400470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 10020227 - 10020152
Alignment:
Q  17 cacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaat 90  Q
    ||||||||||||||||| ||||   ||||||||||||||||||||||||||||||| ||||||  || ||||||||    
T  10020227 cacccaaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaaaatctacccttccattcaat 10020152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 25225304 - 25225403
Alignment:
Q  28 ttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 125  Q
    ||||||||||||  ||||| |||||| ||||| ||| || |||| |||||||||||||||||||||||  | |||||||||||  ||||| |||||||||    
T  25225304 ttaagacattaggtatatgggtcatcacacttgtatctttttcaccatctactattgcattcaatgtggaactttaactcacaaatgacatattaacatc 25225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 20788532 - 20788453
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| || |||||||  | ||||| | ||||||||||||||    
T  20788532 atatgagtcatatcacttatatattgttcaacatttactattgaatccaatgtggaactttaaataacacttgacacatt 20788453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 52753117 - 52753015
Alignment:
Q  28 ttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 125  Q
    ||||||||||||||  || |||| || |||||||||||||||||| || ||||||| |||||||| | | ||||||||||| || | | |||||||||||    
T  52753117 ttaagacattagatgtattagtcttcgcacttatatgttgttcaatatatactatttcattcaatttataattttaactcatacataatacattaacatc 52753018  T
Q  126 tct 128  Q
    |||    
T  52753017 tct 52753015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 39183183 - 39183069
Alignment:
Q  9 cacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcac 107  Q
    |||| |||||||| ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||| |   | ||||| ||||    
T  39183183 cacatcttcaccctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatatagaactttaaatcac 39183084  T
Q  108 acttgacacattaac 122  Q
    ||||||||| |||||    
T  39183083 acttgacacgttaac 39183069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 39187401 - 39187291
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    |||| |||||||||| |||||| ||||||||||  |||| ||||||| ||  |   | |||||||||||||||||| ||||| |||||| | |||||| |    
T  39187401 atatcagtcatctcatttatattttgttcaacacatacttttgcatttaacatagaactttaactcacacttgacatattaaaatctctcccttaagtgt 39187302  T
Q  140 gagactctctg 150  Q
    |||||||||||    
T  39187301 gagactctctg 39187291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 30169901 - 30170006
Alignment:
Q  45 agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagac 144  Q
    |||||||||| |||||| ||||||||||| |||| || |||||||  |   | |||||||||||||||||| |||||||| ||| | |||||| ||| ||    
T  30169901 agtcatctcatttatattttgttcaacatatacttttacattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgtgatac 30170000  T
Q  145 tctctg 150  Q
    ||||||    
T  30170001 tctctg 30170006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 432046 - 431968
Alignment:
Q  58 atatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaag 136  Q
    |||||||  ||||||| |||| |||||| ||||||   ||||||||||||| |||||||||||| |||||| |||||||    
T  432046 atatgtttctcaacatatactcttgcatccaatgtcgaattttaactcacaattgacacattaatatctctccattaag 431968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 32970436 - 32970533
Alignment:
Q  29 taagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||  ||||| |||||||||||||||| || |||| |||||||| ||||||  ||||||  | ||| ||||||| |||||| ||||||||    
T  32970436 taagacattaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcacatttgacatattaacat 32970533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 34849788 - 34849897
Alignment:
Q  22 aaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 119  Q
    |||||||||||||||||  ||  | ||| ||||||||||||| ||  ||| ||||||| |||| ||||||||||  | ||||| |||||  |||||||||    
T  34849788 aaaatcttaagacattatgtacataagttatctcacttatattttcctcaccatctaccattgaattcaatgtgaaactttaattcacatatgacacatt 34849887  T
Q  120 aacatctctt 129  Q
    ||||||||||    
T  34849888 aacatctctt 34849897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 2251056 - 2250975
Alignment:
Q  48 catctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 129  Q
    ||||||||||||||||||||||| || ||  ||| ||| |||| |    |||||||||| ||||||||||||||||||||||    
T  2251056 catctcacttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacatctctt 2250975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 14045470 - 14045389
Alignment:
Q  48 catctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 129  Q
    |||||||||||||||||||||||  | ||| ||| ||| |||| |   ||||||||||||||| |||||||||||| |||||    
T  14045470 catctcacttatatgttgttcaaattttaccattccatccaatataaaattttaactcacactcgacacattaacacctctt 14045389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 9611703 - 9611832
Alignment:
Q  21 caaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 118  Q
    ||||| ||||||||||||| |||  | ||||||||||| | || ||| | || |||||||||||||| ||| ||   | ||||| |||||| ||||||||    
T  9611703 caaaaccttaagacattaggtatacgggtcatctcactaacattttgcttaaaatctactattgcatccaacgtagaagtttaaatcacacatgacacat 9611802  T
Q  119 ta--acatctcttcattaagtatgagactct 147  Q
    ||  |||||||||| ||||||||||||||||    
T  9611803 taacacatctcttc-ttaagtatgagactct 9611832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 50241569 - 50241485
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    ||||||||||||||||||||||||| ||||  || |||| ||  || || | |   |||||||||||||||||||||||||||||    
T  50241569 atatgagtcatctcacttatatgttattcataatttactcttatatccactatagaattttaactcacacttgacacattaacat 50241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 6087838 - 6087930
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcatta 134  Q
    |||||||| ||  ||||||||||||| |||||||||| | |||||| || ||||  |||||||||  ||||||| | ||||| ||||||||||||    
T  6087838 atatgagttatgccacttatatgttgctcaacatctaatcttgcatacattgtggaattttaact--cacttgagatattaaaatctcttcatta 6087930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 12744020 - 12744055
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactatt 81  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12744020 gtcatctcacttatatgttattcaacatctactatt 12744055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 37835443 - 37835479
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctac 77  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37835443 atatgagtcatctcactt-tatgttgttcaacatctac 37835479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 44904897 - 44904856
Alignment:
Q  106 acacttgacacattaacatctcttcattaagtatgagactct 147  Q
    |||||||| |||||||||||||||| | ||||||||||||||    
T  44904897 acacttgatacattaacatctcttcctcaagtatgagactct 44904856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 14638 - 14522
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14638 gacatcacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaacatctactattgcattcaatgtgttatttta 14539  T
Q  102 actcacacttgacacat 118  Q
    |||||||||||| ||||    
T  14538 actcacacttgatacat 14522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 290
Target Start/End: Complemental strand, 14503 - 14373
Alignment:
Q  159 atccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagacttatgg-ggagccaacacttgtgtgaatgacga 257  Q
    |||||||| |||||||||| |||||| | ||||||||||||||||| || ||||||| |||| |||||||||| |||||||||||||||||||||  | |    
T  14503 atccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccattaagacttatggaggagccaacacttgtgtgaat--caa 14406  T
Q  258 cacattgcagaaagagtaatcacacaagtgaga 290  Q
    ||||||| |||||| | ||||||||||||||||    
T  14405 cacattgaagaaagggcaatcacacaagtgaga 14373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 47112 - 47277
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatatgagt--catctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    |||| |||| ||||||||||| ||||||||||| || |||| ||  |||||||||||||||||||||||||||||||||| ||| ||| |||  | ||||    
T  47112 gacaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatgttgttcaacatctactattccatacaacgtgaaacttta 47211  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccac 167  Q
    |||||||||||| |||  ||||| |||  || || | | |||||||||||||| | ||||||||||    
T  47212 actcacacttgatacaacaacatttctctatcaaatgttagactctctgtgtaagtgatccaccac 47277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 41449 - 41512
Alignment:
Q  50 tctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttga 113  Q
    |||||||||||| |||||||||||| ||| || ||| ||| |||  ||||||||||||||||||    
T  41449 tctcacttatatattgttcaacatcaactcttccatacaacgtgaaattttaactcacacttga 41512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 38788897 - 38789060
Alignment:
Q  5 acatcacaacttcacccaaaatcttaagacatta-gatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 103  Q
    |||||||| ||||| ||||| ||| ||| ||||| ||||||  |||| | | |||||||||| |||  ||||||| |||||| |||||||  ||||||||    
T  38788897 acatcacaccttcatccaaagtctcaaggcattacgatatggatcatattatttatatgttgctcat-atctactcttgcatacaatgtgaaattttaac 38788995  T
Q  104 tcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 168  Q
    | |||||| |||||||||||||||| |||||||| | |||||||| |||| || |||||||||||    
T  38788996 ttacacttaacacattaacatctctccattaagtgtcagactctccgtgtttgtgatccaccacc 38789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 2452221 - 2452101
Alignment:
Q  27 cttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 126  Q
    |||||| |||||| | |||||||   |||||||||||| ||| |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| ||||    
T  2452221 cttaaggcattaggtttgagtcaaaacacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatct 2452123  T
Q  127 cttcattaagtatgagactctc 148  Q
    ||||   |||||||||||||||    
T  2452122 cttctccaagtatgagactctc 2452101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 43989777 - 43989681
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||| |||||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||||||||||||||||||||||  |||||||    
T  43989777 atatgaatcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagt 43989681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 17510236 - 17510374
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 166  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17510236 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17510335  T
Q  167 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    ||| |||||||| || || ||| ||||||||||| ||||    
T  17510336 ccaagaaccactcccactcccctaaaatgttgaatcggg 17510374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 17542978 - 17542840
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 166  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17542978 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17542879  T
Q  167 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    ||| |||||||| || || ||| ||||||||||| ||||    
T  17542878 ccaagaaccactcccactcccctaaaatgttgaatcggg 17542840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 29912714 - 29912532
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    |||| |||| |||||||| |||||||| || |||||  |||||  ||||  ||||||||||||  |||||||||||| || ||| |||||||  | ||||    
T  29912714 gacaacacatcttcaccccaaatcttatgaaattaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtg--acttta 29912617  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttc 186  Q
    ||||||||||||| ||||||||| |||   | ||||| |||||||||||  |||| |||| |||||||  ||||| ||| |||||    
T  29912616 actcacacttgacgcattaacatttctctctcaagtacgagactctctgcatatgagatctaccaccataaaccaattctgcttc 29912532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 4120006 - 4120098
Alignment:
Q  51 ctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgaga 143  Q
    ||||||||||||||| |||||||| ||| ||| || |||||||  ||||||||| ||||||||||| |||  |||||| |||||||| |||||    
T  4120006 ctcacttatatgttgctcaacatccacttttgaatccaatgtgaaattttaactaacacttgacacgttagtatctctccattaagtgtgaga 4120098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 6677088 - 6677207
Alignment:
Q  7 atcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaact 104  Q
    |||||| ||||| | |||| ||||||||||| |  |||||||||||||||| |||||||||||||| || |||  || |||||||| |   |||||||||    
T  6677088 atcacatcttcatctaaaaccttaagacatttggtatatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaattttaact 6677187  T
Q  105 cacacttgacacattaacat 124  Q
    ||||||| ||| ||||||||    
T  6677188 cacacttaacaaattaacat 6677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 45406737 - 45406685
Alignment:
Q  96 attttaactcacacttgacacattaacatctcttcattaagtatgagactctc 148  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  45406737 attttaactcacaattgacacattaacatttctccattaagtatgagactctc 45406685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 17474752 - 17474890
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 166  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17474752 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17474851  T
Q  167 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    ||| |||||||| || |  ||| ||||||||||| ||||    
T  17474852 ccaagaaccactcccacacccctaaaatgttgaatcggg 17474890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 17578462 - 17578324
Alignment:
Q  67 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 166  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17578462 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17578363  T
Q  167 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 205  Q
    ||| |||||||| || |  ||| ||||||||||| ||||    
T  17578362 ccaagaaccactcccacacccctaaaatgttgaatcggg 17578324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 42078960 - 42079050
Alignment:
Q  47 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgtt--attttaactcacacttgacacattaacatctcttcattaa 135  Q
    |||||||||||| |||||| |||| ||||||| ||||||  ||||| |   | |||||||||||| |||||||||||||||||||| ||||    
T  42078960 tcatctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatctcttccttaa 42079050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 2928038 - 2927976
Alignment:
Q  23 aaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgc 83  Q
    |||||||||||||||||  ||||| |||  || ||||||||||||||||||||||||| ||||    
T  2928038 aaatcttaagacattagttatatgggtctcctaacttatatgttgttcaacatctacttttgc 2927976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 4110362 - 4110437
Alignment:
Q  47 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||| |||||| |||| || ||||||||||||||||||  || |||||| || |  ||||||||||||||    
T  4110362 tcatctcacttacatgttgctcaatatatactattgcattcaatgtagtagtttaacccata--tgacacattaacat 4110437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 24708517 - 24708451
Alignment:
Q  54 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatta 120  Q
    |||||||||||| ||||||| |||| || ||| |||||| | ||||||||||| | |||||||||||    
T  24708517 acttatatgttgctcaacatatactcttacatacaatgtataattttaactcataattgacacatta 24708451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 26374611 - 26374649
Alignment:
Q  43 tgagtcatctcacttatatgttgttcaacatctactatt 81  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  26374611 tgagtcatctcacttatatcttattcaacatctactatt 26374649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 15464394 - 15464443
Alignment:
Q  100 taactcacacttgacacattaacatctcttcattaagtatgagactctct 149  Q
    |||||||||| |||||||||| ||||||| | |||||| |||||||||||    
T  15464394 taactcacacatgacacattagcatctctaccttaagtgtgagactctct 15464443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 45610345 - 45610390
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatg 91  Q
    ||||||| |||||||||||||||| |||||||| || |||||||||    
T  45610345 gtcatctaacttatatgttgttcaccatctactttttcattcaatg 45610390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 5785971 - 5786019
Alignment:
Q  100 taactcacacttgacacattaacatctcttcattaagtatgagactctc 148  Q
    ||||||||||||||||||||||| | ||| | || ||||||||||||||    
T  5785971 taactcacacttgacacattaacttatctcccttcagtatgagactctc 5786019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 20181468 - 20181326
Alignment:
Q  5 acatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 102  Q
    |||||||| |||||||||||| ||||   |||||| |||  | ||||| | |||| |||||| ||||| ||||||| ||| || |||| |   | |||||    
T  20181468 acatcacatcttcacccaaaacctta---cattaggtatacgggtcatattacttgtatgtttttcaatatctactcttgaatccaatatagaactttaa 20181372  T
Q  103 ctcacacttgacacattaacatctcttcattaagtatgagactctc 148  Q
     ||||| ||||  ||||||||||||| | |||||||||||||||||    
T  20181371 atcacatttgatgcattaacatctctcctttaagtatgagactctc 20181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 29168 - 29268
Alignment:
Q  47 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 146  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||  | ||||||||||| |||| |||||||||| ||| | |||| | ||||||||    
T  29168 tcatctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacatatctcccttaactgtgagactc 29267  T
Q  147 t 147  Q
    |    
T  29268 t 29268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 12687 - 12571
Alignment:
Q  15 ttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttg 112  Q
    ||||||||||||||||||  || || |||  | ||||||||||||||||||||||||| || ||||||| ||| |||||| | | ||||||||| ||||     
T  12687 ttcacccaaaatcttaaggtatcaggtatacgtgtcatctcacttatatgttgttcaaaatatactattccatccaatgtataactttaactcaaacttc 12588  T
Q  113 acacattaacatctctt 129  Q
    | |||||||||||||||    
T  12587 atacattaacatctctt 12571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 1942 - 1847
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||||| |||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||||||||||||||||||||||  |||||||    
T  1942 tatgagttatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagt 1847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 30965 - 30812
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    ||||||||  ||||||||||||||||| ||||||||  |||| |||||||||| |||||||||| |||| || |||||| |||   |||||   |  |||    
T  30965 gacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgt-agaagtta 30867  T
Q  102 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatg 156  Q
    |||||||| ||||||||||| ||||||   ||||||||| |||||| ||||||||    
T  30866 actcacacatgacacattaatatctctctcttaagtatgggactctttgtgtatg 30812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 6424 - 6506
Alignment:
Q  46 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 128  Q
    ||||||||||||||||||||||||||||||| | |||||| |||| ||  | ||||||||||| |||| ||||||||| ||||    
T  6424 gtcatctcacttatatgttgttcaacatctatttttgcatccaatatggaactttaactcacatttgatacattaacacctct 6506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 826 - 915
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 129  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   | ||| ||||||||||||||||||||||||||||    
T  826 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaacttttactcacacttgacacattaacatctctt 915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 7546 - 7668
Alignment:
Q  4 gacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 101  Q
    |||| |||||||||||   ||| ||||||||||||| |||    ||||||| |||||||||||| |||| ||||||| || ||| |||||| | |  |||    
T  7546 gacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgtataacgtta 7645  T
Q  102 actcacacttgacacattaacat 124  Q
    |||| || |||||||||||||||    
T  7646 actcgcatttgacacattaacat 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 2091 - 2129
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  2091 atatgagtcatataacttatatgttgttcaacatctact 2129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 279 - 371
Alignment:
Q  44 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    |||||||||| |||| |||||  ||| ||||||||||||||| |||| |   ||||||||||||||||| ||||||||||||||| ||||||||    
T  279 gagtcatctcgcttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgccacattaacatctctccattaagt 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 5233 - 5137
Alignment:
Q  56 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 153  Q
    |||||||||| ||| |||||||| |||||| |||||||  ||||||||| |||||| | |||||||||||||| |||||||| | |||||||| ||||    
T  5233 ttatatgttgctca-catctactcttgcatacaatgtgaaattttaacttacacttaaaacattaacatctctccattaagtgtcagactctccgtgt 5137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 2376 - 2229
Alignment:
Q  41 tatgagtcatctcacttatatgttgttcaacatctactatt---gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 137  Q
    ||||| |||||||| || ||||||| |||||||||| || |   |||| |||||||  ||||||||| ||||||||||||||||||| |||||||||||     
T  2376 tatgaatcatctcatttgtatgttgctcaacatctattactcctgcatccaatgtggaattttaacttacacttgacacattaacatatcttcattaagg 2277  T
Q  138 atgagactctctgtgtatgcgatccaccaccacgaaccacttccgctt 185  Q
       || ||||| |||| || |||||| ||||| ||| |||| ||||||    
T  2276 tcaaggctctccgtgtgtgtgatccaacaccaagaatcactcccgctt 2229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 37129 - 37016
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 139  Q
    |||||| |||||||||||||||||| ||||| ||||||| ||  || || | |   ||||||||||||||||||||||||||||||||||  | |||| |    
T  37129 atatgaatcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagttt 37030  T
Q  140 gagactctctgtgt 153  Q
    |  |||||||||||    
T  37029 gcaactctctgtgt 37016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 35492 - 35454
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  35492 atatgagtcatataacttatatgttgttcaacatctact 35454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 1457 - 1376
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaa 121  Q
    ||||| |||||||||||||||| || ||||| ||||| | || ||||||||||   |  || ||||||||||||||||||||    
T  1457 atatgggtcatctcacttatatattattcaaaatctattcttccattcaatgttgaacattcactcacacttgacacattaa 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 31023 - 31137
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  31023 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 31120  T
Q  153 tatgcgatccaccacca 169  Q
    |||| |||| |||||||    
T  31121 tatgagatctaccacca 31137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 12554 - 12654
Alignment:
Q  47 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgtt--attttaactcacacttgacacattaacatctcttcattaagtatgagac 144  Q
    |||||||||||| |||||| |||| || |||| ||||||  ||||| |   | |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  12554 tcatctcacttacatgttgctcaatatttactcttgcatctaatgtatagaaatttaactcacacatgacacattaacatctcttccttaagtgtgagac 12653  T
Q  145 t 145  Q
    |    
T  12654 t 12654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 18450 - 18539
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 129  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   |||||||||||||||||||  |||||||||||||    
T  18450 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctctt 18539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 19707 - 19745
Alignment:
Q  40 atatgagtcatctcacttatatgttgttcaacatctact 78  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  19707 atatgagtcatataacttatatgttgttcaacatctact 19745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 218 - 316
Alignment:
Q  27 cttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 124  Q
    |||||||||||||||||  ||||||| |||||||| ||||||||||||  |||| |||||  ||||| |  |  ||||||||||||||||||||||||||    
T  218 cttaagacattagatatatgagtcatatcacttatttgttgttcaacagttactcttgcagccaatgcgaga-cttaactcacacttgacacattaacat 316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 19862 - 19976
Alignment:
Q  53 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 152  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  | ||||| || |||||||||||||||||| ||| | | ||||| |||||||||||      
T  19862 cacttatatgttactcaatatctactcttacatccaatgtg--actttaattcgcacttgacacattaacatttctccctcaagtacgagactctctgca 19959  T
Q  153 tatgcgatccaccacca 169  Q
    |||| |||| |||||||    
T  19960 tatgagatctaccacca 19976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 45618 - 45671
Alignment:
Q  14 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttg 65  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||    
T  45618 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttg 45671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 153169 - 153116
Alignment:
Q  14 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttg 65  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||    
T  153169 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttg 153116  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 128292 - 128389
Alignment:
Q  49 atctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 146  Q
    ||||||||||||||||  |||| || ||||| ||||  |||| ||  |||||||||||||| |||||||| ||||| | ||| |||| | ||||||||    
T  128292 atctcacttatatgttactcaatatatactactgcagccaatatggaattttaactcacacatgacacataaacatatattccttaaatgtgagactc 128389  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 50495 - 50446
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 147  Q
    |||||||| ||||||||||||| |||||||| |||||||| | |||||||    
T  50495 tttaactcgcacttgacacattgacatctctacattaagtttcagactct 50446  T

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Target: scaffold1819 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1819
Description:

Target: scaffold1819; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 179 - 223
Alignment:
Q  27 cttaagacattagatatgagtcatctcacttatatgttgttcaac 71  Q
    |||||||||||  || |||||||||||||||||||||| ||||||    
T  179 cttaagacatttaatttgagtcatctcacttatatgttattcaac 223  T

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Target: scaffold1737 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 562 - 510
Alignment:
Q  98 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 150  Q
    ||||||||||| ||||||||||||||||||| | |||||  ||| ||||||||    
T  562 tttaactcacatttgacacattaacatctctcccttaagcgtgaaactctctg 510  T

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Target: scaffold1104 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1104
Description:

Target: scaffold1104; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 1701 - 1745
Alignment:
Q  27 cttaagacattagatatgagtcatctcacttatatgttgttcaac 71  Q
    |||||||||||  || |||||||||||||||||||||| ||||||    
T  1701 cttaagacatttaatttgagtcatctcacttatatgttattcaac 1745  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 22749 - 22806
Alignment:
Q  232 ggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaa 291  Q
    |||||||||| | ||||||||  ||| |||||| |||||||||||||| |||||||||||    
T  22749 ggagccaacagtggtgtgaat--cgatacattggagaaagagtaatcaaacaagtgagaa 22806  T

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