View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_32 (Length: 296)
Name: NF9321_low_32
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30549888 - 30549618
Alignment:
| Q |
18 |
gtatttcctagctttgggtcttatttgaagtttgagaaacgtacaagttacaaacttcaaatgctgattcttttattaagaaaataagggaaattttcta |
117 |
Q |
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| T |
30549888 |
gtatttcctagctttgggtcttatttgaagtttgagaaacgtacaagttacaaacttcaaatgctgattcttttattaagaaaataagggaaattttcca |
30549789 |
T |
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| Q |
118 |
ttttcccaatacttcaatatcaatagttgtgcagccttctacaactcttctgttttgccattgactcgtttttctccttttgaaggagggtcaagtttcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
30549788 |
ttttcccaatacttcaatatcaatagttgtgcagccttctacaactcttctgttttgccattgactcgtttttctccttttgaaagagtgtcaagtttcg |
30549689 |
T |
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| Q |
218 |
caactttcataaattaggaaagattagaataaatcaacatgtatcnnnnnnnggatgagcttagaataatc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30549688 |
caactttcataaattaggaaagattagaataaatcaacatgtatctttttttggatgagcttagaataatc |
30549618 |
T |
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