View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_34 (Length: 293)
Name: NF9321_low_34
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 38872082 - 38871817
Alignment:
| Q |
16 |
ggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgcccctccgcggcacctttcttctctctcacagcctctc |
115 |
Q |
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| T |
38872082 |
ggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgtccctccgcggcacctttcttctctctcacatcctctc |
38871983 |
T |
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| Q |
116 |
ttatatgtgtttgccgaaaccgggttacagctgcctggatttcttctgctgtatgggatagtgtctctttgcattgcaggattatcgataaaattgacag |
215 |
Q |
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| T |
38871982 |
ttatatgtgtttgccgaaaccgggttacagctgcctggatttcttctgttgtatgggatagtgtctctttgcattgcaggattaccgataaaattgacag |
38871883 |
T |
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| Q |
216 |
cctcgacatcttgagttaaaagtgtggaaatcaaaaagagcactaaggaacacagccaatgatgtc |
281 |
Q |
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| T |
38871882 |
cctcgacatcttgagttaaaagtgtggaaatcaaaaagagcactaaggaacacaaccaatgttgtc |
38871817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 95 - 281
Target Start/End: Original strand, 38782652 - 38782837
Alignment:
| Q |
95 |
tcttctctctcacagcctctcttatatgtgtttgccgaaaccgggttacagctgcctggatttcttctgctgtatgggatagtgtctctttgcattgcag |
194 |
Q |
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| T |
38782652 |
tcttctatctcacatcctctctgatatgtgtttgccgaaactgggttgcagctgcctggatttcttctgttgcatgggatagtgtctctttgcattgcag |
38782751 |
T |
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| Q |
195 |
gattatcgataaaattgacagcctcgacatcttgagttaaaagtgtggaaatcaaaaagagcactaaggaacacagccaatgatgtc |
281 |
Q |
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| T |
38782752 |
gattaccgataatattgacagcctcaacatcttgagtaaaaagtgtgcaaatc-aaaagagcactaagaaacacaaccaatgttgtc |
38782837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 38875247 - 38874979
Alignment:
| Q |
15 |
aggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgcccct------ccgcggcacctttcttctctctcaca |
108 |
Q |
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| T |
38875247 |
aggcatggcaaagtacatatagtttttttgtaacaacaataaatctcgtcgtc---tacttcgcccctggccctccacgacacttttcttctgtctcaca |
38875151 |
T |
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| Q |
109 |
gcctctcttatatgtgtttgccgaaaccgggttacagctgcctggatttcttctgctgtatgggatagtgtctctttgcattgcaggattatcgataaaa |
208 |
Q |
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| T |
38875150 |
gcctctttgatatgtgtttgtcggtttctggttgcagctgcctggatcttttttgctgcatgggatagtgtctctttgcattgcaggattactgataaca |
38875051 |
T |
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| Q |
209 |
ttgacagcctcgacatcttgagttaaaagtgtggaaatcaaaaagagcactaaggaacacagccaatgatgtc |
281 |
Q |
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| T |
38875050 |
ttgccagcctcaacgtcttgagttacaaatgtgcaaatc-aaaagagcactaaggaacgcaaccaatgttgtc |
38874979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 38786176 - 38786228
Alignment:
| Q |
15 |
aggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtc |
67 |
Q |
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| T |
38786176 |
aggcatgacaaagtacatatagtttttctataacaacaataaatcccgtcgtc |
38786228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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