View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9321_low_4 (Length: 520)
Name: NF9321_low_4
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 34820210 - 34820696
Alignment:
| Q |
18 |
tcacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtc |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
34820210 |
tcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctttgtctgatttgtcgtctgcgagttgatggtc |
34820309 |
T |
|
| Q |
118 |
aaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatct |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820310 |
aaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatct |
34820409 |
T |
|
| Q |
218 |
tcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttag |
317 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820410 |
tccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttag |
34820509 |
T |
|
| Q |
318 |
cttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
34820510 |
cttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaa |
34820609 |
T |
|
| Q |
418 |
actactattatttttagcttcatctaagttgtcatctgcgagctgatggttaacctcagcttccaaagccacctctgacgtaccaat |
504 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34820610 |
actactattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaat |
34820696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 34820328 - 34820800
Alignment:
| Q |
19 |
cacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtca |
118 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||| | || ||||| ||||||||| |
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|
| T |
34820328 |
cacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatcttccgcgagctgatggtca |
34820427 |
T |
|
| Q |
119 |
accacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatctt |
218 |
Q |
| |
|
||| |||||| ||| |||||||||| ||||||| |||||||||| ||| ||||||||||||||||| | ||||||||| ||||||||||||||| || | |
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|
| T |
34820428 |
acctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgt |
34820527 |
T |
|
| Q |
219 |
cagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagc |
318 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||| || |||| |||||| |||| ||| ||| ||||||||||||||| ||||||||||||| |
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| T |
34820528 |
ctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaactactattatttttagc |
34820627 |
T |
|
| Q |
319 |
ttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaaa |
418 |
Q |
| |
|
||||||| | ||||| ||| | |||||||||| || |||| |||||||| ||||||| |||||||| | |||| |||| || ||||| |||||||||||| |
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|
| T |
34820628 |
ttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaa |
34820727 |
T |
|
| Q |
419 |
ctactattatttttagcttcatctaagttgtcatctgcgagctgatggttaacctcagcttccaaagccacct |
491 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||| |
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|
| T |
34820728 |
ctactattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacct |
34820800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 104 - 501
Target Start/End: Original strand, 34820179 - 34820576
Alignment:
| Q |
104 |
gcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagctt |
203 |
Q |
| |
|
|||||||||||||||||| || |||| |||| ||||| ||||||||||| || |||||||||||| |||||||||||||||| |||||||| |||||||| |
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|
| T |
34820179 |
gcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt |
34820278 |
T |
|
| Q |
204 |
catctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
303 |
Q |
| |
|
|||||||| || || ||||| |||||||||||| |||||| |||| |||||||||| ||||||| |||||||||| ||| ||||||||||||||||| |
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|
| T |
34820279 |
tgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaaca |
34820378 |
T |
|
| Q |
304 |
aatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaata |
403 |
Q |
| |
|
| ||||||||| ||||||||||||||| || || |||||||||||||||| |||||||| |||||||||||| || ||||| |||||| |||| | | | |
|
|
| T |
34820379 |
actattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgaca |
34820478 |
T |
|
| Q |
404 |
ctttcgtcaacaaaactactattatttttagcttcatctaagttgtcatctgcgagctgatggttaacctcagcttccaaagccacctctgacgtacc |
501 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||| || |||| |||||||| ||||||| ||| |||| |
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|
| T |
34820479 |
ctctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacatacc |
34820576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 34820445 - 34820876
Alignment:
| Q |
19 |
cacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtca |
118 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||| |||||||||||||||||| |||||| || |||||| ||||||||| |||||||||| ||||||||| |
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|
| T |
34820445 |
cacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtca |
34820544 |
T |
|
| Q |
119 |
accacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatctt |
218 |
Q |
| |
|
| | ||||||| ||| ||||||| ||| |||| | |||| |||| |||||||| ||||||||||||| ||||||||||| |||||||||| | || || | |
|
|
| T |
34820545 |
agctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaactactattatttttagcttcatctaagttgtcat |
34820644 |
T |
|
| Q |
219 |
cagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagc |
318 |
Q |
| |
|
| | |||||||||| ||||||| ||| |||| |||||||||| ||||||| |||||||||| ||| ||||||||||||||||||| ||||||||| ||| |
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|
| T |
34820645 |
ctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactattattttcagc |
34820744 |
T |
|
| Q |
319 |
ttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaaa |
418 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| || |||||||||||| |||||| | | |||| |||||| |||| || ||||| |||||||||||| |
|
|
| T |
34820745 |
ttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaacaaaa |
34820844 |
T |
|
| Q |
419 |
ctactattatttttagcttcatctaagttgtc |
450 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |
|
|
| T |
34820845 |
ctactattatttccagcttcatctaacttgtc |
34820876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 34820562 - 34820878
Alignment:
| Q |
19 |
cacctctgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtca |
118 |
Q |
| |
|
|||||| ||| |||| |||| | |||| ||||| || |||||||||||||||||||||| || |||||| ||| | ||| | ||| | || ||||||| | |
|
|
| T |
34820562 |
cacctccgacataccgacatcaattttagtgatactttcgtcaacaaaactactattatttttagcttcatctaagttgtcatctacaagctgatggtta |
34820661 |
T |
|
| Q |
119 |
accacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatctt |
218 |
Q |
| |
|
||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || | |
|
|
| T |
34820662 |
acctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaactactattattttcagcttcatctaatttgtcgt |
34820761 |
T |
|
| Q |
219 |
cagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttagc |
318 |
Q |
| |
|
| |||||||||||| ||| ||||||| |||| |||||| || ||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||| |
|
|
| T |
34820762 |
ctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaacaaaactactattatttccagc |
34820861 |
T |
|
| Q |
319 |
ttcatctgatttgtcgt |
335 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
34820862 |
ttcatctaacttgtcgt |
34820878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 218 - 503
Target Start/End: Original strand, 34820176 - 34820461
Alignment:
| Q |
218 |
tcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttag |
317 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||| ||||| ||| |||||||||| ||||||| ||| |||||||||||||||||| |||||| || || |
|
|
| T |
34820176 |
tcagcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcag |
34820275 |
T |
|
| Q |
318 |
cttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaa |
417 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| | ||||||||||| ||||||| |||||||| | |||| |||| || ||||| ||||||||||| |
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|
| T |
34820276 |
ctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaa |
34820375 |
T |
|
| Q |
418 |
actactattatttttagcttcatctaagttgtcatctgcgagctgatggttaacctcagcttccaaagccacctctgacgtaccaa |
503 |
Q |
| |
|
|| ||||||||||| |||||||||| | || || || ||||||||||||| ||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
34820376 |
acaactattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaa |
34820461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 34819904 - 34819985
Alignment:
| Q |
222 |
cgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
303 |
Q |
| |
|
|||| |||||||||| || | ||| |||||||||| | | |||||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
34819904 |
cgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatactctcgtcaacaaaact |
34819985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 34819943 - 34819984
Alignment:
| Q |
144 |
acgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
185 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
34819943 |
acgtaccatcatcatttttggtgatactctcgtcaacaaaac |
34819984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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