View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_40 (Length: 280)
Name: NF9321_low_40
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_40 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 41929851 - 41929590
Alignment:
| Q |
15 |
aacaatgacaaaattgtatgcagtggattcccttccgttgaatgggaccgaaatctagatcttacaaaatgttttttgaagaaagaagttttagacgtgc |
114 |
Q |
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| T |
41929851 |
aacaatgacaaaattatatgcagtggattcccttccgttgaatgggaccgaaatctagatcttacaaaatgttttttgaagaaagaagttttagacgtgc |
41929752 |
T |
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| Q |
115 |
ttcataattctaaagatatcaagagtccggctccgaatgacttgaactttgaattctttaagaccctttggaaagttaattatgaagctggaagtgttgt |
214 |
Q |
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| T |
41929751 |
ttcataattctaaagatatcaagagtccgactccgaatgacttgaactttgaattctttaagtccctttggaaag----ttatgaagctggaagtgttgt |
41929656 |
T |
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| Q |
215 |
tgttgttcgatcattttcatcaaaatgaatgccactattgcacaaagggcaacacattgggaacac |
280 |
Q |
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| T |
41929655 |
tgttgttcgatcattttcatcaaaatgaatgccactaatgcacaaagggaaacacattgggaacac |
41929590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 43756950 - 43757155
Alignment:
| Q |
32 |
atgcagtggattcccttccgttgaatgggaccgaaatctagatcttacaaaatgttttttgaagaaagaagttttagacgtgcttcataattctaaagat |
131 |
Q |
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| T |
43756950 |
atgcagtggattccccttggttgaattggaccaacatctagatcttacaaaaagttttttg----aagaagtttttgaggtggttcataatgcaaaagat |
43757045 |
T |
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| Q |
132 |
atcaagagtccggctccgaatgacttgaactttgaattctttaagaccctttggaaagttaattatgaagctggaagtgttgttgttgttcgatcatttt |
231 |
Q |
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| T |
43757046 |
attcagagtccggttccaaatgacttcaacatagaattctttcaatcctttttgaaag----ttatgaagtcggaagtgttggtgttgttcgatcaattt |
43757141 |
T |
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| Q |
232 |
catcaaaatgaatg |
245 |
Q |
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| T |
43757142 |
catcaacatgaatg |
43757155 |
T |
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