View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_41 (Length: 276)

Name: NF9321_low_41
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_41
NF9321_low_41
[»] chr6 (8 HSPs)
chr6 (1-276)||(34819908-34820183)
chr6 (1-67)||(34819841-34819907)
chr6 (199-275)||(34820536-34820612)
chr6 (199-275)||(34820653-34820729)
chr6 (75-139)||(34835101-34835165)
chr6 (199-238)||(34820807-34820846)
chr6 (200-276)||(34820301-34820377)
chr6 (199-275)||(34820419-34820495)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 34820183 - 34819908
Alignment:
Q  1 ctcgctgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgaga 100  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  34820183 ctcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgaga 34820084  T
Q  101 aaagagttagctgccaagaacataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaag 200  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||    
T  34820083 aaagagttagctgccaagaacataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggag 34819984  T
Q  201 ttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaa 276  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  34819983 ttttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaa 34819908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34819907 - 34819841
Alignment:
Q  1 ctcgctgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatg 67  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  34819907 ctcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatg 34819841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 34820612 - 34820536
Alignment:
Q  199 agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca 275  Q
    |||||| ||||||| |||||||| |||| |||||| |||||||  |||||||||||| ||| | || ||||||||||    
T  34820612 agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatca 34820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
Q  199 agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca 275  Q
    |||||| |||||||||||||||| ||||||||| |||||| ||  ||||||| |||| ||||| || || |||||||    
T  34820729 agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca 34820653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
Q  75 tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa 139  Q
    ||||||||||||| | || || |||||||||||||| || || ||||||||||||| ||||||||    
T  34835165 tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa 34835101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
Q  199 agttttattgacgagagtatcaccaaaaatgatgttggta 238  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  34820846 agttttgttgacgagagtatcacaaaaaatgatgttggta 34820807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 34820377 - 34820301
Alignment:
Q  200 gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaa 276  Q
    ||||| |||||||||||||||| ||||||||| |||||| ||  ||||||| |||| ||| |  | |||||||||||    
T  34820377 gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaa 34820301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 34820495 - 34820419
Alignment:
Q  199 agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca 275  Q
    |||||| ||||||||||| |||  ||||||||||||||||  |  |||||||||||| ||| | || ||||||||||    
T  34820495 agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatca 34820419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University