View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_48 (Length: 253)
Name: NF9321_low_48
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 39790499 - 39790279
Alignment:
| Q |
24 |
aacaacttatgtataagcacttagttataagtgattgtgttgtaagaacttaannnnnnnattcaaacagaaggaaatagaagttacctgatacaaaaat |
123 |
Q |
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| T |
39790499 |
aacaacttatgtataagcacttagttataagtgattgtgttgtaagaacttaatttttttattcaaacagaaggaaatagaagttacctgatacaaaaat |
39790400 |
T |
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| Q |
124 |
tgagcataattcctcaagaacaaaggatttcctggattttgctgaaccattttcttgtaatattgttccaccccatgattattattatctccatcattcc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790399 |
tgagcataattcctcaagaacaaaggatttcctggattttgctgaaccattttcttgtaatattgttccaccccatgattattattatctccatcattcc |
39790300 |
T |
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| Q |
224 |
tttcagaatccatagaattat |
244 |
Q |
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||||||||||||||||||||| |
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| T |
39790299 |
tttcagaatccatagaattat |
39790279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 39411372 - 39411506
Alignment:
| Q |
107 |
ttacctgatacaaaaattgagcataattcctcaagaacaaaggatttcctggattttgctgaaccattttcttgtaatattgttccaccccatgattatt |
206 |
Q |
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|||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
39411372 |
ttacctgatacagaaactgagcataattcctcagaaacaatggatttcctggattttgttgaaccattttcttgtaatattcttccaccccatg---att |
39411468 |
T |
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| Q |
207 |
attatctccatcattcctttcagaatccatagaattat |
244 |
Q |
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| T |
39411469 |
actatctccatcattccctccagaacccatggaattat |
39411506 |
T |
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