View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_5 (Length: 505)
Name: NF9321_low_5
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Original strand, 23700874 - 23701354
Alignment:
| Q |
11 |
acctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacata |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700874 |
acctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacata |
23700973 |
T |
|
| Q |
111 |
gctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
23700974 |
gctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaa |
23701073 |
T |
|
| Q |
211 |
ttgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctct--ttaatttttgcagctagatatctt |
308 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
23701074 |
ttgaacaacaatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgtgaatttttgcagctagatatctt |
23701173 |
T |
|
| Q |
309 |
ccaacacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatgcagatatcacaataggattgtttca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23701174 |
ccaacacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttca |
23701273 |
T |
|
| Q |
409 |
actgagaagaagacgaaga---cgacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttg |
486 |
Q |
| |
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||||||||||||| |||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23701274 |
actgagaagaagaataagacggcgacaaagaatattcacctacaaaagcctgcttctgcttctgtttgagatcaacttttg |
23701354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Complemental strand, 23694927 - 23694457
Alignment:
| Q |
11 |
acctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacata |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23694927 |
acctatgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacata |
23694828 |
T |
|
| Q |
111 |
gctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23694827 |
gctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaa |
23694728 |
T |
|
| Q |
211 |
ttgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctctttaatttttgcagctagatatcttcc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23694727 |
ttgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttcc |
23694628 |
T |
|
| Q |
311 |
aacacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatgcagatatcacaataggattgtttcaac |
410 |
Q |
| |
|
|| ||||| |||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||| || ||| |||| ||||||||||||||| |
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| T |
23694627 |
aagacaatcttcacagaaagaatgtgaacatttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtttcaac |
23694528 |
T |
|
| Q |
411 |
tgagaagaagacgaagacgacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatc |
490 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23694527 |
tgagaagaagacg---------aagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatc |
23694457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 23697052 - 23696647
Alignment:
| Q |
17 |
gtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| ||||||||||||| |
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|
| T |
23697052 |
gtgccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaa |
23696953 |
T |
|
| Q |
117 |
caatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaac |
216 |
Q |
| |
|
||||||||||||||||| || ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || | | |
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|
| T |
23696952 |
caatcattaaaaggacagtacaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgc |
23696853 |
T |
|
| Q |
217 |
tacaatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctctttaatttttgcagctagatatcttccaacaca |
316 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||| |
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|
| T |
23696852 |
tacaattatgaggctccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacaca |
23696753 |
T |
|
| Q |
317 |
atattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatgcagatatcacaatagga-ttgtttcaactgaga |
415 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||||||| || ||||||||||||||||||||||| |||| ||||| || |||||| ||||| |
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|
| T |
23696752 |
tccttcacagaaagagtgtgaacagttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatttttttcaattgaga |
23696653 |
T |
|
| Q |
416 |
agaaga |
421 |
Q |
| |
|
|||||| |
|
|
| T |
23696652 |
agaaga |
23696647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 8149021 - 8149377
Alignment:
| Q |
15 |
gtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctg |
114 |
Q |
| |
|
|||||||||| ||| | ||||||||| ||||| | ||||||||||||||||||||||| | |||||| | | ||| ||||||||| ||||||||||| |
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|
| T |
8149021 |
gtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttcatttccatcattcaccaacatagctg |
8149120 |
T |
|
| Q |
115 |
aacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattga |
214 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||| || |||| | | ||| ||||||| | ||||||| || ||||||||||||| || |||||| |
|
|
| T |
8149121 |
aacaatccttaaaaggacaataaattttctttgatccgaacatcgaa---tcaactagtgcatctccccatctttcgaacacatcctttggtataattga |
8149217 |
T |
|
| Q |
215 |
actacaatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctctttaatttttgcagctagatatcttccaaca |
314 |
Q |
| |
|
| |||| | |||| || ||| || |||||| ||||||||||||||||||| ||| | | |||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
8149218 |
aatacattgttgagtgtcaaaattactattgcaatttggatcaggacattttattgttgcttttttctcttgaattttcacagctagaaatcttgcaaca |
8149317 |
T |
|
| Q |
315 |
caatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggttta |
374 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| ||| |||||||| ||||| ||||||| |
|
|
| T |
8149318 |
caatcttcacagaaagagtgcgaacagtttctacttttgaacattttttcaataggttta |
8149377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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