View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9321_low_50 (Length: 249)
Name: NF9321_low_50
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10879350 - 10879111
Alignment:
| Q |
1 |
caaatcagagagtgaaaatatatcagnnnnnnngtaattaagaaaggtaagtggaatttgatcaatcaacaatcaaaagtagattagtaaattcaagtaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879350 |
caaatcagagagtggaaatatatcagaaaaaaagtaattaagaaaggtaagtggaatttgatcaatcaacaatcaaaagtagattagtaaattcaagtaa |
10879251 |
T |
|
| Q |
101 |
tgataaaatggaatcgatattgactagattataggattagacattgcaagcggatgccccaactcactatcaacctatccaaattccacagcagttatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879250 |
tgataaaatggaatcgatattgactagattataggattagacattgcaagcggatgccccaactcactatcaacctatccaaattccacagcagttatta |
10879151 |
T |
|
| Q |
201 |
aaaattataactgtgattttaacttacaaaaaccaacacc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879150 |
aaaattataactgtgattttaacttacaaaaaccaacacc |
10879111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 10847924 - 10847855
Alignment:
| Q |
35 |
taattaagaaaggtaagtggaatttgatcaatcaacaatcaaaagtagattagtaaattcaagtaatgat |
104 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10847924 |
taattaagaaaggttgatggaatttgaccaatcaacaatcaaaagtatattagtaaattcaagtaatgat |
10847855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 10847774 - 10847732
Alignment:
| Q |
102 |
gataaaatggaatcgatattgactagattataggattagacat |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10847774 |
gataaaatggaatcgatattgactagattataggattagacat |
10847732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University