View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_54 (Length: 243)
Name: NF9321_low_54
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 34864082 - 34864279
Alignment:
| Q |
35 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcacttcaagcgtaactaattgagtcacttttttggttattctattgctatatgatta |
134 |
Q |
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| T |
34864082 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcactttaagcgtaactaattgagtcacttttttggttatgctattgctatatgatta |
34864181 |
T |
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| Q |
135 |
tgctaaaacaaacaaataatagactcat--aatcaaagacatcatattccactaatcagtcaatgtgcacaacagaagtaccggaaatcaccaagcca |
230 |
Q |
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| T |
34864182 |
tgctaaaacaaacaaataatagagtcataaaatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtactggaaattaccaagcca |
34864279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34861041 - 34861082
Alignment:
| Q |
1 |
tcaagatcaatgccacacttacttgatcatcataaagaaaaa |
42 |
Q |
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| T |
34861041 |
tcaagatcaatgccacacttacttgatcatcataaagaaaaa |
34861082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 7945184 - 7945246
Alignment:
| Q |
142 |
acaaacaaataatagactcataa-tcaaagacatcatattccactaatcagtcaatgtgcacaa |
204 |
Q |
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| T |
7945184 |
acaagcaaataatggaatcataaatcaaaga-attatattccactaatcagtcaatgtgcacaa |
7945246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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