View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_55 (Length: 240)
Name: NF9321_low_55
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39790604 - 39790826
Alignment:
| Q |
1 |
cacacaaacttgatttgttagtggatatactatagtactgttggcgatgaatacaaaattgatgttgttttgatttgacagtgcaaacaagaccttgaag |
100 |
Q |
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| T |
39790604 |
cacacaaacttgatttgttagtggatatactatagtactgttggcgatgaatacaaaattgatgttgttttgatttgacagtgcaaacaagaccttgaag |
39790703 |
T |
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| Q |
101 |
gagcagaggagtattactccagagccatactagcagacccaaatgacggcgaagttttatcacagtatgggaaactagtttgggagctacatcacgacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790704 |
gagcagaggagtattactccagagccatactagcagacccaaatgacggcgaagttttatcacagtatgggaaactagtttgggagctacatcacgacga |
39790803 |
T |
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| Q |
201 |
agaaagagcctccagttattttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
39790804 |
agaaagagcctccagttattttg |
39790826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 39411188 - 39411012
Alignment:
| Q |
49 |
gaatacaaaattgatgttgttttga--tttgacagtgcaaacaagaccttgaaggagcagaggagtattactccagagccatactagcagacccaaatga |
146 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
39411188 |
gaatgcaaaattgatgttgttttgagttttgacagtgcaaacaagaccgtgaaggagcagaggaatattattccagagccatactagcagatccaaatga |
39411089 |
T |
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| Q |
147 |
cggcgaagttttatcacagtatgggaaactagtttgggagctacatcacgacgaagaaagagcctccagttattttg |
223 |
Q |
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|| |||||| | ||||||||||| || |||||||||||| |||||| || ||||||||||| ||||| ||||||| |
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| T |
39411088 |
tggagaagttctgtcacagtatggaaagctagtttgggagttacatcgtgatgaagaaagagcatccagctattttg |
39411012 |
T |
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