View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_58 (Length: 239)
Name: NF9321_low_58
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 9413870 - 9413944
Alignment:
| Q |
21 |
tttcgtgttgtttggtcgtatgtccagtggagataggaggtgagttgtggtagatcacgacatgatgtgaaaatt |
95 |
Q |
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| T |
9413870 |
tttcctgttgtttggtcgtatgtccagtggagatacgaggtgagttgtggtagatcacgacatgatgtgaaaatt |
9413944 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 9414007 - 9414061
Alignment:
| Q |
158 |
aacaaacattaagattgagatgaggaacataaaccttaagttcttaaccatgttg |
212 |
Q |
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| T |
9414007 |
aacaaacattaagattgagatgaggaacataaaccttaagttcttaaccatgttg |
9414061 |
T |
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