View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_6 (Length: 464)
Name: NF9321_low_6
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 12697979 - 12698139
Alignment:
| Q |
16 |
gttaatagaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctag |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12697979 |
gttaatagaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctag |
12698078 |
T |
|
| Q |
116 |
cagcaattcacatggtttaggaaccacgttacttgtaactccagaaacataacatcagtgc |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12698079 |
cagcaattcacatggtttaggaaccacgttacttgtaactccagaaacataacatcagtgc |
12698139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 241 - 455
Target Start/End: Original strand, 12698200 - 12698415
Alignment:
| Q |
241 |
gtataaatattatgatctttaaattgtaacaaacctaataaatcatgttcgtcttcttcgatgacaccaatgaaatgtatgnnnnnnnn-ataactgtaa |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||| |
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| T |
12698200 |
gtataaatattatgatctttaaattgtaacaaacctaataaatcatgtttgtcttcttcgaagacaccaatgaaatgtatgtttttttttataactataa |
12698299 |
T |
|
| Q |
340 |
caatagtaaaaactatcnnnnnnncattaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagt |
439 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
12698300 |
caatagtaaaaactatcaaaaaaacattaccacatgtaacttggcatgacacgtcaaacatatggcagtgtcacgtagacagtcaaatgacatgtcaagt |
12698399 |
T |
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| Q |
440 |
taactaacagaataat |
455 |
Q |
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|||||||||||||||| |
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| T |
12698400 |
taactaacagaataat |
12698415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 45077813 - 45077953
Alignment:
| Q |
22 |
agaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaa |
121 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||||| ||||| || ||||||| |
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| T |
45077813 |
agaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgttggaaaaggacattcaatttccttctcttgcagcaa |
45077912 |
T |
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| Q |
122 |
ttcacatggtttaggaaccacgttacttgtaactccagaaa |
162 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45077913 |
ttcacatggtttaggaaccacattacttgtaactccagaaa |
45077953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 45082109 - 45082249
Alignment:
| Q |
22 |
agaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaa |
121 |
Q |
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|||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||| |
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| T |
45082109 |
agaagacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaatttccttctctttcagcag |
45082208 |
T |
|
| Q |
122 |
ttcacatggtttaggaaccacgttacttgtaactccagaaa |
162 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45082209 |
ttcacatggtttaggaaccacattacttgtaactccagaaa |
45082249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 45067034 - 45067166
Alignment:
| Q |
33 |
ctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaattcacatggtt |
132 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||| || |||||| |||||||||| |
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| T |
45067034 |
ctttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgattttcttctctggcagcatatcacatggtt |
45067133 |
T |
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| Q |
133 |
taggaaccacgttacttgtaactccagaaacat |
165 |
Q |
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|||||||| | ||||||| |||||||||||||| |
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| T |
45067134 |
taggaaccgcattacttgcaactccagaaacat |
45067166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 45074584 - 45074726
Alignment:
| Q |
26 |
gacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaa---ttcccttcgctagcagcaat |
122 |
Q |
| |
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|||||| |||| ||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||| || | ||| || ||||||| |
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| T |
45074584 |
gacactacttttgaagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaaatttttctttctctgccagcaat |
45074683 |
T |
|
| Q |
123 |
tcacatggtttaggaaccacgttacttgtaactccagaaacat |
165 |
Q |
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||||| ||| ||||| ||| |||||||||||||||||||||| |
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| T |
45074684 |
tcacagggtgtaggactcacattacttgtaactccagaaacat |
45074726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 47984939 - 47984886
Alignment:
| Q |
402 |
tgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagaataat |
455 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||| ||| |||||||||||||| |
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| T |
47984939 |
tgacagtgtcacgtagacagtcgaatgtcatgtcacgttgactaacagaataat |
47984886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 34504349 - 34504492
Alignment:
| Q |
22 |
agaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaa |
121 |
Q |
| |
|
|||| ||||| |||| || ||||||||||||||| |||||| |||||| | | |||| |||||||||| |||||||||||| |||| || ||||| |
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| T |
34504349 |
agaacacactacttttaatgttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctctgacagcag |
34504448 |
T |
|
| Q |
122 |
ttcacatggtttaggaaccacgttacttgtaactccagaaacat |
165 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34504449 |
atcacatggtttaggaaccacattacttgtaactccagaaacat |
34504492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 451
Target Start/End: Complemental strand, 44157550 - 44157464
Alignment:
| Q |
365 |
attaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagaa |
451 |
Q |
| |
|
||||| |||||| || ||||||||||| ||| ||| |||||||||||| |||||||||||||| ||||| | ||| |||||||||| |
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| T |
44157550 |
attacaacatgtgacgtggcatgacacatcagacacgtgacagtgtcacgtagacagtcaaatgtcatgttatgttgactaacagaa |
44157464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 33614729 - 33614644
Alignment:
| Q |
366 |
ttaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagaa |
451 |
Q |
| |
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||||||| ||| || ||||||||||||||||||| || ||||| |||||||||||||||||| || |||| ||| |||||||||| |
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| T |
33614729 |
ttaccacctgtgacgtggcatgacacgtcaaacacgtggcagtgccacatagacagtcaaatgccacgtcatgttgactaacagaa |
33614644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 30333857 - 30333906
Alignment:
| Q |
261 |
aaattgtaacaaacctaataaatcatgttcgtcttcttcgatgacaccaa |
310 |
Q |
| |
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||||| ||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
30333857 |
aaattataacaaacctaataaatcatgtttatctttttcaatgacaccaa |
30333906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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