View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_61 (Length: 238)

Name: NF9321_low_61
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_61
NF9321_low_61
[»] chr6 (2 HSPs)
chr6 (1-223)||(12266611-12266843)
chr6 (1-110)||(12426100-12426209)
[»] chr4 (2 HSPs)
chr4 (7-106)||(55955771-55955870)
chr4 (2-104)||(55959214-55959316)
[»] chr8 (1 HSPs)
chr8 (168-223)||(33620891-33620946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-222)||(320906-320956)
[»] chr5 (3 HSPs)
chr5 (168-222)||(7713525-7713579)
chr5 (173-223)||(33369426-33369476)
chr5 (173-221)||(13864342-13864390)
[»] chr2 (1 HSPs)
chr2 (167-221)||(12599880-12599934)
[»] chr1 (1 HSPs)
chr1 (169-223)||(1824654-1824708)
[»] chr3 (1 HSPs)
chr3 (168-221)||(43345022-43345075)
[»] scaffold0122 (1 HSPs)
scaffold0122 (173-221)||(14201-14249)
[»] chr7 (3 HSPs)
chr7 (175-223)||(10236918-10236966)
chr7 (173-221)||(28230777-28230825)
chr7 (167-223)||(29726792-29726848)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12266611 - 12266843
Alignment:
Q  1 ctgcaaggtgaaaatatagttgatgttcttctgcgcattcagcaaagcggcagtcttaatatcccaatcacacatgacaatgtcaaagccgtgatatggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12266611 ctgcaaggtgaaaatatagttgatgttcttctgcgcattcagcaaagcggcagtcttaatatcccaatcacacatgacaatgtcaaagccgtgatatggg 12266710  T
Q  101 ttagttactacactaaattaattcctctatc-----atatcatatcata-----tcatatagtattaatcatctatctgtcttcgtgagtttaactcagt 190  Q
    |||||||||||||||||||||||||||||||     |||||||||||||     |||||||||||||||||||||| |||| ||||||||||||||||||    
T  12266711 ttagttactacactaaattaattcctctatcatatcatatcatatcatatcatctcatatagtattaatcatctatatgtcctcgtgagtttaactcagt 12266810  T
Q  191 tatcatgaacaatacataatgtatgcaaggttc 223  Q
    ||||||||||||| |||||||||||||||||||    
T  12266811 tatcatgaacaatgcataatgtatgcaaggttc 12266843  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12426209 - 12426100
Alignment:
Q  1 ctgcaaggtgaaaatatagttgatgttcttctgcgcattcagcaaagcggcagtcttaatatcccaatcacacatgacaatgtcaaagccgtgatatggg 100  Q
    ||||||||||||||| |||| ||||||||| ||||||| |||||| |  |||||||  | |||||||| ||||| ||||||||||||||||| || ||||    
T  12426209 ctgcaaggtgaaaatctagtagatgttcttttgcgcatccagcaacgtagcagtctcgagatcccaataacacaagacaatgtcaaagccgtaatctggg 12426110  T
Q  101 ttagttacta 110  Q
    ||||||||||    
T  12426109 ttagttacta 12426100  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 55955870 - 55955771
Alignment:
Q  7 ggtgaaaatatagttgatgttcttctgcgcattcagcaaagcggcagtcttaatatcccaatcacacatgacaatgtcaaagccgtgatatgggttagtt 106  Q
    ||||||||| |||||||||||||| ||||| |||||||||| | || | |  ||||||| |||||| | |||||||||||||||||  | ||||||||||    
T  55955870 ggtgaaaatctagttgatgttcttttgcgcgttcagcaaagtgacaatttcgatatccctatcacagacgacaatgtcaaagccgtcctgtgggttagtt 55955771  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 55959316 - 55959214
Alignment:
Q  2 tgcaaggtgaaaatatagttgatgttcttctgcgcattcagcaaagcggcagtcttaatatcccaatcacacatgacaatgtcaaagccgtgatatgggt 101  Q
    |||||| ||||||| |||||||||||||| ||||| |||| ||||| |||  |||  |  ||||||||||||| || |||||||||||||| |||||| |    
T  55959316 tgcaagatgaaaatttagttgatgttcttttgcgcgttcaacaaagtggctatctcgaggtcccaatcacacaagagaatgtcaaagccgtaatatggct 55959217  T
Q  102 tag 104  Q
    |||    
T  55959216 tag 55959214  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 33620891 - 33620946
Alignment:
Q  168 tgtcttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggttc 223  Q
    |||||||||||||||||||||||||  ||| ||||| |||||| ||| ||||||||    
T  33620891 tgtcttcgtgagtttaactcagttagtatggacaatgcataatatatacaaggttc 33620946  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 320956 - 320906
Alignment:
Q  172 ttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggtt 222  Q
    |||||||| |||||||||||  ||||||||||||||||| |||| ||||||    
T  320956 ttcgtgagcttaactcagtttgcatgaacaatacataatatatgtaaggtt 320906  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 7713525 - 7713579
Alignment:
Q  168 tgtcttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggtt 222  Q
    ||||||||||||||||||||||||   ||||| ||| |||||| |||||||||||    
T  7713525 tgtcttcgtgagtttaactcagttgatatgaataatgcataatatatgcaaggtt 7713579  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 33369476 - 33369426
Alignment:
Q  173 tcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggttc 223  Q
    ||||||| |||||||||||   |||||||||||||||||||||||| ||||    
T  33369476 tcgtgagcttaactcagttggtatgaacaatacataatgtatgcaacgttc 33369426  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 13864342 - 13864390
Alignment:
Q  173 tcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggt 221  Q
    ||||||| |||||||||||   |||||||||||||||| ||||||||||    
T  13864342 tcgtgagcttaactcagttggtatgaacaatacataatatatgcaaggt 13864390  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 12599934 - 12599880
Alignment:
Q  167 ctgtcttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggt 221  Q
    |||||||||| || ||||||||||||  ||| |||||||||||| ||||||||||    
T  12599934 ctgtcttcgtaagcttaactcagttagtatggacaatacataatatatgcaaggt 12599880  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 1824654 - 1824708
Alignment:
Q  169 gtcttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggttc 223  Q
    ||||||| |||||||||||||||  ||  ||||||||||||| ||||||||||||    
T  1824654 gtcttcgggagtttaactcagttgacagaaacaatacataatatatgcaaggttc 1824708  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 43345075 - 43345022
Alignment:
Q  168 tgtcttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggt 221  Q
    |||| ||||||||||| |||||||   |||||||||||||||| ||||||||||    
T  43345075 tgtcctcgtgagtttagctcagttggtatgaacaatacataatatatgcaaggt 43345022  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 14249 - 14201
Alignment:
Q  173 tcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggt 221  Q
    |||||||||||||||||||   ||||||||| |||||| ||||||||||    
T  14249 tcgtgagtttaactcagttggtatgaacaatgcataatatatgcaaggt 14201  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 10236966 - 10236918
Alignment:
Q  175 gtgagtttaactcagttatcatgaacaatacataatgtatgcaaggttc 223  Q
    |||||||||||||||||   | ||||||| |||||||||||||||||||    
T  10236966 gtgagtttaactcagttggtaagaacaatgcataatgtatgcaaggttc 10236918  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 28230777 - 28230825
Alignment:
Q  173 tcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggt 221  Q
    ||||||||||||||||||| | ||| ||||| ||| |||||||||||||    
T  28230777 tcgtgagtttaactcagttgtaatggacaatgcatgatgtatgcaaggt 28230825  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 29726792 - 29726848
Alignment:
Q  167 ctgtcttcgtgagtttaactcagttatcatgaacaatacataatgtatgcaaggttc 223  Q
    ||||| ||||||| |||||||||||  ||||||||||  ||||| ||||||||||||    
T  29726792 ctgtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggttc 29726848  T

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