View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9321_low_66 (Length: 218)
Name: NF9321_low_66
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9321_low_66 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10879647 - 10879430
Alignment:
| Q |
1 |
cagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctttatctactcgacgttccaggctctc |
100 |
Q |
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| T |
10879647 |
cagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctttatctactcgatgttccaggctctc |
10879548 |
T |
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| Q |
101 |
tctttcaagaattagcttctcaactagactgtttagtttactaacattttccttgtaatagaagatgtaacccacatgccgaatagtcaggtccaacaca |
200 |
Q |
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| T |
10879547 |
tctttcaagaattagcttctcaactagactgtttagttcactaacattttccttgtaatagaagatgtaacccacatgccgaatagtcaggtacaacaca |
10879448 |
T |
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| Q |
201 |
acatcgacaactctttct |
218 |
Q |
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| ||| ||| || ||||| |
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| T |
10879447 |
aaatcaacagctttttct |
10879430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10848251 - 10848034
Alignment:
| Q |
1 |
cagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctttatctactcgacgttccaggctctc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |
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| T |
10848251 |
cagttctagttttatccactttctgaagccaagctgcaacattactttcggttattcctagattatcctcagcttcatctactcgatgttccagcctctt |
10848152 |
T |
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| Q |
101 |
tctttcaagaattagcttctcaactagactgtttagtttactaacattttccttgtaatagaagatgtaacccacatgccgaatagtcaggtccaacaca |
200 |
Q |
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| T |
10848151 |
tctttcaagacttagcttctcaacaagattgtttagttcactaacattgtccttgtaatagaagatgtaacccacatgccgaacagtcaggtccaacaca |
10848052 |
T |
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| Q |
201 |
acatcgacaactctttct |
218 |
Q |
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||||||||| |||||||| |
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| T |
10848051 |
acatcgacagctctttct |
10848034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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