View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9321_low_68 (Length: 209)

Name: NF9321_low_68
Description: NF9321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9321_low_68
NF9321_low_68
[»] chr5 (10 HSPs)
chr5 (15-190)||(30746317-30746494)
chr5 (62-190)||(30680499-30680629)
chr5 (62-190)||(30716668-30716798)
chr5 (62-190)||(30056591-30056728)
chr5 (86-172)||(30480214-30480301)
chr5 (128-190)||(30432733-30432795)
chr5 (15-54)||(30056987-30057026)
chr5 (15-51)||(30680201-30680237)
chr5 (15-54)||(30716379-30716418)
chr5 (131-189)||(29611690-29611748)
[»] chr4 (2 HSPs)
chr4 (100-190)||(20302754-20302844)
chr4 (15-54)||(20302357-20302396)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 30746494 - 30746317
Alignment:
Q  15 cacagaaactataaaaggtgatgattttggatgatatgaaatagctgagacattttttaagagatttgattt--gtgaaccttgtgattttgtctcagac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  30746494 cacagaaactataaaaggtgatgattttggatgatatgaaatagctgagacattttttaagagacttgatttatgtgaaccttgtgattttgtctcagac 30746395  T
Q  113 gaaatcgattaaaattgtcaaccttatgggtcagattattgttatcgcatctccacttccgttgatgctggtattgat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30746394 gaaatcgattaaaattgtcaaccttatgggtcagattattgttatcgcatctccacttccgttgatgctggtattgat 30746317  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 30680499 - 30680629
Alignment:
Q  62 agacattttttaagagatttgatt--tgtgaaccttgtgattttgtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattattgttatcg 159  Q
    ||||||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30680499 agacattttttaagagactttattcatgtgaaccttgtgattttgtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattatcgttatcg 30680598  T
Q  160 catctccacttccgttgatgctggtattgat 190  Q
    |||||||||||||||||||||||||||||||    
T  30680599 catctccacttccgttgatgctggtattgat 30680629  T

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Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 30716668 - 30716798
Alignment:
Q  62 agacattttttaagagatttgattt--gtgaaccttgtgattttgtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattattgttatcg 159  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30716668 agacattttttaagagacttgatttatgtgaaccttgtgattttgtctgagacgaaatcgattaaaattgtcaaccttatgggtcagattatcgttatcg 30716767  T
Q  160 catctccacttccgttgatgctggtattgat 190  Q
    | | ||||||||| |||||||||||||||||    
T  30716768 cgtttccacttccattgatgctggtattgat 30716798  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 30056728 - 30056591
Alignment:
Q  62 agacattttttaagagatttgattt--gtgaaccttgtgattttgtctc-------agacgaaatcgattaaaattgtcaaccttatgggtcagattatt 152  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||        |||| ||||||||||||||||||||||||||  ||||||||||     
T  30056728 agacattttttaagagacttgatttatgtgaaccttgtgattttgtcttttgtctgagacaaaatcgattaaaattgtcaaccttatacgtcagattatc 30056629  T
Q  153 gttatcgcatctccacttccgttgatgctggtattgat 190  Q
    |||||||| | ||||||||| |||||||||||||||||    
T  30056628 gttatcgcgtttccacttccattgatgctggtattgat 30056591  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 30480301 - 30480214
Alignment:
Q  86 tgtgaaccttgtgatttt-gtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattattgttatcgcatctccacttcc 172  Q
    |||||| ||||||||||| |||| |||||||||| ||||||  ||||||||| |||||||||||||| ||||| || |||||||||||    
T  30480301 tgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgtcaacctaatgggtcagattatcgttatggcgtctccacttcc 30480214  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 30432795 - 30432733
Alignment:
Q  128 tgtcaaccttatgggtcagattattgttatcgcatctccacttccgttgatgctggtattgat 190  Q
    |||||||||||| ||||| ||||| |||||||| ||||||||| |||| ||||||||||||||    
T  30432795 tgtcaaccttattggtcatattatcgttatcgcgtctccactttcgttaatgctggtattgat 30432733  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 30057026 - 30056987
Alignment:
Q  15 cacagaaactataaaaggtgatgattttggatgatatgaa 54  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  30057026 cacagaaactataagaggtgatgattttggatgatatgaa 30056987  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 30680201 - 30680237
Alignment:
Q  15 cacagaaactataaaaggtgatgattttggatgatat 51  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30680201 cacagaaactataagaggtgatgattttggatgatat 30680237  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 30716379 - 30716418
Alignment:
Q  15 cacagaaactataaaaggtgatgattttggatgatatgaa 54  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  30716379 cacagaatctataagaggtgatgattttggatgatatgaa 30716418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 29611690 - 29611748
Alignment:
Q  131 caaccttatgggtcagattattgttatcgcatctccacttccgttgatgctggtattga 189  Q
    |||||||||||||| |||||| ||||| |||||||||||||  || ||||||| |||||    
T  29611690 caaccttatgggtccgattatcgttattgcatctccacttcaattaatgctggaattga 29611748  T

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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 20302754 - 20302844
Alignment:
Q  100 ttttgtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattattgttatcgcatctccacttccgttgatgctggtattgat 190  Q
    ||||||||||||||||||| ||||||  ||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  20302754 ttttgtctcagacgaaatcaattaaagatgtcaacctgatgggtcagattatcgttatcgcgtctacacttccgttgatgctggtattgat 20302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 20302357 - 20302396
Alignment:
Q  15 cacagaaactataaaaggtgatgattttggatgatatgaa 54  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  20302357 cacagaaactataagaggtgatgattttggatgatatgaa 20302396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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