View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9322_low_1 (Length: 478)
Name: NF9322_low_1
Description: NF9322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9322_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 454
Target Start/End: Original strand, 39178161 - 39178604
Alignment:
| Q |
12 |
ttatactgtataatcacgaaagataggtagcatactaaatccaannnnnnn-aagtgtaatacttgaattgtagaaaaccatgggtcgtgtgttgattaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39178161 |
ttatactgtataatcacgaaagataggtagcatactaaatccaattttttttaagtgtaatacttgaattgtagaaaaccatgggtcgtgtgttgactaa |
39178260 |
T |
|
| Q |
111 |
tgatatttagaaaacaaaaaatgtgcttgaaatccaagtgcaaaagataatatccgacaatgatcagaatgagtaaattcaatacagcataggagaatgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39178261 |
tgatatttagaaaacaaaaaatgtgcttgaaatccaagtgcaaaagataatatccgacaatgatcagaatgagtaaattcaatacaacataggagaatgt |
39178360 |
T |
|
| Q |
211 |
aaacatgcatcagatacttgaatttctgggtcaagatgtattattaagtctgttgttgacttgttgtggtttatcatcccataagttgttagcgtggatc |
310 |
Q |
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| T |
39178361 |
aaacatgcatcagatacttgaatttctgggtcaagatgtattattaagtctgttgttgacttgttgtggtttatcatcccataagttgttagcgtggatc |
39178460 |
T |
|
| Q |
311 |
ataattcatgttgttaagaaaactataaccaaactgatttatatcccaagttaaagggttgtctgatataaacatttttaagggttagggagagtttgaa |
410 |
Q |
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| T |
39178461 |
ataattcatgttgttaagaaaactataaccaaactgatttatatcccaagttaaagggttgtctgatataaacatttttaagggttagggagagtttgaa |
39178560 |
T |
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| Q |
411 |
ggtgagtctttgtgaattatatttatggtaaaaaggtatatgcg |
454 |
Q |
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| T |
39178561 |
ggtgagtctttgtgaattatatttatggtaaaaaggtatatgcg |
39178604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 39181350 - 39181734
Alignment:
| Q |
12 |
ttatactgtataatcacgaaagataggtagcatactaaatcc-aannnnnnnaagtgtaatacttgaattgtagaaaaccatgggtcgtgtgttgattaa |
110 |
Q |
| |
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||||||| |||||||||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39181350 |
ttatactttataatcacgtaagataggtagcattctaaatcccaatttttttaagcgtaatacttgaattgtagaaaaccatgggtcgtgtgttgattaa |
39181449 |
T |
|
| Q |
111 |
tgatatttagaaaacaaaaaatgtgcttgaaatccaagtgcaaaagataatatccgacaatgatcagaatgagtaaattcaatacagcataggagaatgt |
210 |
Q |
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| T |
39181450 |
taatatgtagaaaacaaaaaatgtgcttgaaatccacgtgcaaaagataatatctgacaatgatcagaatgagtaaattcaataaagcacaagagaaggt |
39181549 |
T |
|
| Q |
211 |
aaacatgcatcagatacttgaatttctgggtcaagatgtattattaagtctgttgttgacttgttgtggtttatcatcccataagttgttagcgtggatc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| |
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| T |
39181550 |
aaacatgcatcagatacttgaatttctgggtcaagatgtattattaagtttgttgttgagttgttgtggtttagcaccccataagttgttagcgtggatc |
39181649 |
T |
|
| Q |
311 |
ataattcatgttgttaagaaaactataaccaaactgatttatatcccaagttaaagggttgtctgatataaacatttttaagggtta |
397 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
39181650 |
ataattcatgttgttaagcaaac--taaccaaactgatttatatcccaagctaaagggttgtctgatataaacatttttaaaggtta |
39181734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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