View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9322_low_2 (Length: 452)
Name: NF9322_low_2
Description: NF9322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9322_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 3826196 - 3826622
Alignment:
| Q |
18 |
gcatgttagaggttgaagacacccttgatttagagcgtaactaa----accctttagctaaataagcttaaaggatcccataacccatatacaaagaatg |
113 |
Q |
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| T |
3826196 |
gcatgttagaggttgaagacacccttaatttagagcgtaactaattaaaccctttagctaaata-gcttaaaggatcccataacccatatacaaagaatg |
3826294 |
T |
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| Q |
114 |
agcttatcatttttgaagccaatcggctcaaacgcactatcgagtttatataccaatcagaaaaataataatcaacttgtctaccctaccttaatgcgag |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826295 |
agcttatctattttgaagccaatcggctcaaacgcactatcgagtttatataccaatcagaaaaataataatcaacttgtctaccctaccttaatgcgag |
3826394 |
T |
|
| Q |
214 |
ttaggcttggttggacataaccataaatcttttgtatgtaggttcacacccattagtaaaaatagatataaaaggaaaagtaaatttacaaaatatgcat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826395 |
ttaggcttggttggacataaccataaatcttttgtatgtaggtgcacacccattagtaaaaatagatataaaaggaaaagtaaatttacaaaatatgcat |
3826494 |
T |
|
| Q |
314 |
gcatgtgactgaataaacctatctccccttactacataccaaactcatgtaacatgtttgatttgttcctttcctnnnnnnnnttgatttgtttccacaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3826495 |
gcatgtgactgaataaacctatctccccttactacataccaaactcatgtaacatgtttgatttgttcctttcctaaaaaaaattgatttg-ttccacaa |
3826593 |
T |
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| Q |
414 |
catcattccaatccccaaccttgcctttg |
442 |
Q |
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| T |
3826594 |
catcattccaatccccaaccttgcctttg |
3826622 |
T |
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