View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9322_low_4 (Length: 377)
Name: NF9322_low_4
Description: NF9322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9322_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6884814 - 6885086
Alignment:
| Q |
1 |
agaaaccacaattgaaatgaacacacacttgtgctcacaaactatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaagttt |
100 |
Q |
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| T |
6884814 |
agaaaccacaattgaaatgaacacacacttgtgctcacaaattatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaagttt |
6884913 |
T |
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| Q |
101 |
ggcatgagcatctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtaacaacacatgagaacaaaaattattaaccaaaa |
200 |
Q |
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| T |
6884914 |
ggcatgagcatctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtatcaacacatgagaacaaaaattattaacgaaaa |
6885013 |
T |
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| Q |
201 |
tcgaaaaactttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885014 |
tcgaaaaactttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
6885086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 6885097 - 6885127
Alignment:
| Q |
331 |
ttatgtggcaaggaactttatacatacctat |
361 |
Q |
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| T |
6885097 |
ttatgtggcaaggaactttatacatacctat |
6885127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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