View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9322_low_5 (Length: 334)
Name: NF9322_low_5
Description: NF9322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9322_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 1455777 - 1456079
Alignment:
| Q |
17 |
attatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1455777 |
attatcacggacaagcggtgcaaatactatggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgca |
1455876 |
T |
|
| Q |
117 |
gttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1455877 |
gttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagag |
1455976 |
T |
|
| Q |
217 |
ggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1455977 |
ggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagcatagggaagatagccaatagcaagcatag |
1456076 |
T |
|
| Q |
317 |
tat |
319 |
Q |
| |
|
||| |
|
|
| T |
1456077 |
tat |
1456079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 1567568 - 1567266
Alignment:
| Q |
17 |
attatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1567568 |
attatcacggacaagcggtgcaaatactatggctgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgca |
1567469 |
T |
|
| Q |
117 |
gttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1567468 |
gttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagag |
1567369 |
T |
|
| Q |
217 |
ggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1567368 |
ggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatag |
1567269 |
T |
|
| Q |
317 |
tat |
319 |
Q |
| |
|
||| |
|
|
| T |
1567268 |
tat |
1567266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 1556074 - 1555774
Alignment:
| Q |
19 |
tatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagt |
118 |
Q |
| |
|
||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
1556074 |
tatcatggacaagcgatgcaattaccatggccgaaacgatcaaaatgatgctagcagcggtccatgagaaaaaaccaacttctacgactgaaattgcatt |
1555975 |
T |
|
| Q |
119 |
tgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagaggg |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
1555974 |
tgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagccttaattgaataaagaaaacaagaggg |
1555875 |
T |
|
| Q |
219 |
acgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1555874 |
acgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagggaagatagccaatagcaagcatagta |
1555775 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
|
|
| T |
1555774 |
t |
1555774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 1460888 - 1461184
Alignment:
| Q |
19 |
tatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagt |
118 |
Q |
| |
|
||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
1460888 |
tatcatggacaagcgatgcaattaccatggccgaaacgatcaaaatgatgctagcagcggtccatgagaaaaaaccaacttctacgactgaaattgcatt |
1460987 |
T |
|
| Q |
119 |
tgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagaggg |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
1460988 |
tgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagccttaattgaataaagaaaacaagaggg |
1461087 |
T |
|
| Q |
219 |
acgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1461088 |
acgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagggaagatagccaatagcaaacata |
1461184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 267
Target Start/End: Original strand, 1454298 - 1454509
Alignment:
| Q |
56 |
gatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctg |
155 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || ||||||||||||||||| |||| | ||| || ||| ||||||||||||||||||| | | |
|
|
| T |
1454298 |
gatcaaaaagatgctagcaacagtccatgagaaaatactaacttctatgactgaaactgcactaaatatcacaagcatgaataagatcccaaagacgcgg |
1454397 |
T |
|
| Q |
156 |
ttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgcca |
255 |
Q |
| |
|
|||||||||||| | || || | || | ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1454398 |
ttgtcaacagggaaggttatcgcaacagaacacagcccaaattgaataaataaataaagagggacgagtatgaccatgatgatattctcatgttttgcca |
1454497 |
T |
|
| Q |
256 |
taaagttacgac |
267 |
Q |
| |
|
| |||||||||| |
|
|
| T |
1454498 |
tgaagttacgac |
1454509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 1430084 - 1430166
Alignment:
| Q |
237 |
atattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtat |
319 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||| | ||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
1430084 |
atattctgatattttgccatgaagtttgcaccatatgatgttgtctttagggtagggaagataaccaataccaagcatagtat |
1430166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 2164278 - 2164326
Alignment:
| Q |
111 |
attgcagttgatagcaaaagtatgaataagatcccaaagattctgttgt |
159 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||| ||||||| |
|
|
| T |
2164278 |
attgcagttgatagcagaattatgaataagaccccaaagatgctgttgt |
2164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 2162050 - 2162105
Alignment:
| Q |
96 |
acttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
151 |
Q |
| |
|
|||||||| | ||| |||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
2162050 |
acttctataaatgatattgcacttgatagaagaagtatgaataagatcccaaagat |
2162105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 1754131 - 1754212
Alignment:
| Q |
70 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
151 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1754131 |
tagcagcaatccatgatacaaaactaacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagat |
1754212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 1750087 - 1750189
Alignment:
| Q |
65 |
gatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaaca |
164 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| |||||||| || |||| ||||| ||||||| ||||| ||||||||||||||||| ||||| |||| | |
|
|
| T |
1750087 |
gatgatagcagcagtccatgataaataactaacttctacgattgaagttgcacttgatagttcaagtaagaataagatcccaaagacgctgttatcaata |
1750186 |
T |
|
| Q |
165 |
ggg |
167 |
Q |
| |
|
||| |
|
|
| T |
1750187 |
ggg |
1750189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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