View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9322_low_7 (Length: 300)
Name: NF9322_low_7
Description: NF9322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9322_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 30897324 - 30897591
Alignment:
| Q |
16 |
agaagaggggtttttcggttcgtactacaaagccagagttgtttcacgcctccaaaatggacaatacatggttcaatacaagaatcttttgcttgaggac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30897324 |
agaagaggggtttttcggttcgtactacaaagccagagttgtttcacgtctccaaaatggacaatacatggttcaatacaagaatcttttgcttgaggac |
30897423 |
T |
|
| Q |
116 |
aagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30897424 |
aagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttg |
30897523 |
T |
|
| Q |
216 |
atgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcatcactgctgaagag |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30897524 |
atgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcatcactgctgaagag |
30897591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 30962987 - 30962905
Alignment:
| Q |
170 |
ccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaat |
252 |
Q |
| |
|
||||||||||| |||||| | | |||||||||||||| |||||||||| ||| |||| |||||||||||||||||| |||| |
|
|
| T |
30962987 |
ccacgtgttcgaaatccttctaagtttcaactcaatcaaaaagttgatgttttttataaagatggttggtgggtagggaaaat |
30962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 273
Target Start/End: Complemental strand, 5963678 - 5963476
Alignment:
| Q |
71 |
aatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccac |
170 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||||| || || |||||| ||| ||| |||||||| || ||||||||||||| |||||| ||| | |
|
|
| T |
5963678 |
aatggacaatatttggttcgttacaaaaaccttttgcaagatgataagtctagacttctcttagagaccgttcatccatatgagcttcgtccattaccgc |
5963579 |
T |
|
| Q |
171 |
cacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcat |
270 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||| |||||||||||||| | || |||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
5963578 |
cacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagggcaaatcactagtgagaagatcat |
5963479 |
T |
|
| Q |
271 |
cac |
273 |
Q |
| |
|
||| |
|
|
| T |
5963478 |
cac |
5963476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 38782652 - 38782762
Alignment:
| Q |
158 |
cgtccaacaccaccacgtgttcgtaatcctcatgaa-tttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcacc |
256 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||| ||| |||||||||| |||||||||| || |||| ||||||||||||||||| ||||| | |
|
|
| T |
38782652 |
cgtccaataccaccacatgttcgtaatcctt-tgaagtttaaactcaatcaaaaagttgatgtatttgataacgatggttggtgggtaggtaaaatcgct |
38782750 |
T |
|
| Q |
257 |
agtgagaagatc |
268 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
38782751 |
agcgagaagatc |
38782762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 38788864 - 38788934
Alignment:
| Q |
198 |
aactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatc |
268 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||||| ||||| | || ||||||||| |
|
|
| T |
38788864 |
aactcaatcagaaagttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaagatc |
38788934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University