View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9322_low_9 (Length: 280)
Name: NF9322_low_9
Description: NF9322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9322_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 41 - 266
Target Start/End: Complemental strand, 3744900 - 3744675
Alignment:
| Q |
41 |
gtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgctgtttc |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744900 |
gtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgctgtttg |
3744801 |
T |
|
| Q |
141 |
tcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcagattgcttgaatttttgttttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
3744800 |
tcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaaacctagaaccattcaggttcaggttgcttgaatttttgttttg |
3744701 |
T |
|
| Q |
241 |
aataatgatgtagtgtatgtgtgatg |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3744700 |
aataatgatgtagtgtatgtgtgatg |
3744675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 4084453 - 4084497
Alignment:
| Q |
185 |
ctcagcctaagaagcccagaaccattcaagttcagattgcttgaa |
229 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
4084453 |
ctcagcctaagaaacccagaactattcaggttcagattgcttgaa |
4084497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 48303093 - 48302914
Alignment:
| Q |
52 |
tatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactga---tgctgtttctgctgtttctcaagatg |
148 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||| | || ||||||||| || ||| || |||||||||||||| |||||||| |
|
|
| T |
48303093 |
tatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgctgatgttgaaggtggtgtttctgctgtttgtcaagatg |
48302994 |
T |
|
| Q |
149 |
gggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcagattgcttga |
228 |
Q |
| |
|
| ||||| | |||||||||| | || |||||||||||| | ||||||||||| | ||| ||||| ||| || |||||||| |
|
|
| T |
48302993 |
gtgttcttactgttactgttaataagttgcctcctcctgaacctaagaagcctaaaactattcaggttaaggttgcttga |
48302914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 10462342 - 10462434
Alignment:
| Q |
100 |
cttcctgagaatgctaatactgatgctgtttctgctgtttctcaagatggggttctgagtgttactgttc---agaaattgcctcctcctcag |
189 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| | || ||||||||| || | |||||||| || |||||||||||||||||||| |
|
|
| T |
10462342 |
cttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttactgttactgctctcaagaaattgcctcctcctcag |
10462434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University