View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9323_low_1 (Length: 757)

Name: NF9323_low_1
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9323_low_1
NF9323_low_1
[»] chr7 (5 HSPs)
chr7 (462-742)||(31822066-31822345)
chr7 (178-363)||(31822444-31822629)
chr7 (13-87)||(31822703-31822777)
chr7 (468-520)||(7165644-7165696)
chr7 (100-136)||(31822671-31822707)
[»] chr4 (1 HSPs)
chr4 (468-600)||(27737862-27737994)
[»] chr3 (1 HSPs)
chr3 (487-583)||(36472552-36472648)
[»] scaffold0311 (2 HSPs)
scaffold0311 (465-586)||(13489-13609)
scaffold0311 (487-589)||(15090-15190)
[»] chr6 (2 HSPs)
chr6 (468-511)||(20985917-20985960)
chr6 (517-589)||(30372021-30372093)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 462 - 742
Target Start/End: Complemental strand, 31822345 - 31822066
Alignment:
Q  462 ctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggtt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |    
T  31822345 ctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgatttcttttctcaatcaaaccattatggct 31822246  T
Q  562 cttttggctctaattctccaaattctcagaaactcaacattcaccaaatccttcatttggctaattagttagcatctccaatcttaataagaatttatgc 661  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||| ||||||    
T  31822245 cttttggctctaattctccaaattctcataaactcaacattcaccatatccttcatttggctaattagttagcatcaccaatcttgagaagaa-ttatgc 31822147  T
Q  662 atatgattcagcttcattcatttgaatcatctcatattgtcttctcaaagcttaaagccatatcttcttgagattattttg 742  Q
    | ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31822146 aaatgattcagcttcattcatctggatcatctcatattgtcttctcaaagcttaaagccatatcttcttgagattattttg 31822066  T

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Target: chr7; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 178 - 363
Target Start/End: Complemental strand, 31822629 - 31822444
Alignment:
Q  178 gactcgtttcttgtgaatcttgggttgatgagattgtgatgtaaccttatacgagttactttgcttcaacctcaatttttgtacttctagcgaggcttgc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  31822629 gactcgtttcttgtgaatcttgggttgatgagattgtgatgtaaccttatacgagttactttgcttcaatctcaatttttgtacttctagtgaggcttgc 31822530  T
Q  278 aattcttttcaccttatatgatcaacacttgcagttaaggttctcaacatattttcaatcttcatcaagtcactaactgtttcact 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31822529 aattcttttcacctaatatgatcaacacttgcagttaaggttctcaacatattttcaatcttcatcaagtcactaactgtttcact 31822444  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 31822777 - 31822703
Alignment:
Q  13 tggacatcaattatgggataattaggatagacttgataatgtttttataaatagaaattgattttaatttcttga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31822777 tggacatcaattatgggataattaggatagacttgataatgtttttataaatagaaattgattttaatttcttga 31822703  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 7165644 - 7165696
Alignment:
Q  468 agtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaat 520  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7165644 agtcctataaatatggactagtatgtactcattttctatcttttgatcaaaat 7165696  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 31822707 - 31822671
Alignment:
Q  100 cttgattatttgaattcttgttagaaccttcaaaaaa 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  31822707 cttgattatttgaattcttgttagaaccttcaaaaaa 31822671  T

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Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 468 - 600
Target Start/End: Original strand, 27737862 - 27737994
Alignment:
Q  468 agtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttg 567  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||    
T  27737862 agtcctataaataaggactagtatgtactcattttctatcttttgatcaaaatgtttttctacgattccttttctcaatcaaagccttatggctctattg 27737961  T
Q  568 gctctaattctccaaattctcagaaactcaaca 600  Q
    |||||||||||||||||||||| ||||||||||    
T  27737962 gctctaattctccaaattctcaaaaactcaaca 27737994  T

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Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 487 - 583
Target Start/End: Original strand, 36472552 - 36472648
Alignment:
Q  487 agtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaa 583  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| ||||||||||||    
T  36472552 agtatgtactcattttccatcttttgatcaaaatgtttttctatgattccttttgtcaatcaaagccttacggctcttttggctttaattctccaaa 36472648  T

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Target: scaffold0311 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 465 - 586
Target Start/End: Original strand, 13489 - 13609
Alignment:
Q  465 attagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttc-t 563  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| | ||  ||||||||||||||| |||| ||| || |    
T  13489 attagtcctataaatatggactagtatgtactcattttctatcttttgatcaaaatatttctctgtaat--cttttctcaatcaaagccttttggctctt 13586  T
Q  564 tttggctctaattctccaaattc 586  Q
    ||||  ||||||||||| |||||    
T  13587 tttgtttctaattctccgaattc 13609  T

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Target: scaffold0311; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 589
Target Start/End: Original strand, 15090 - 15190
Alignment:
Q  487 agtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttc-ttttggctctaattctccaaatt 585  Q
    |||||||||||||||||||||||||||||||||| ||| ||| | ||  ||||| ||||||||| |||| ||| || |||||  ||||||||||| ||||    
T  15090 agtatgtactcattttctatcttttgatcaaaatatttctctgtaat--ctttt-tcaatcaaagccttttggctctttttgtttctaattctccgaatt 15186  T
Q  586 ctca 589  Q
    ||||    
T  15187 ctca 15190  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 20985960 - 20985917
Alignment:
Q  468 agtcctataaatatggacaagtatgtactcattttctatctttt 511  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  20985960 agtcctataaatatggactagtatgtactcatttgctatctttt 20985917  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 589
Target Start/End: Original strand, 30372021 - 30372093
Alignment:
Q  517 aaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaattctca 589  Q
    |||||||| | | ||| ||||||||||||||||| |||||||| |||||||  || ||||||| |||||||||    
T  30372021 aaatgtttctatgtgaatccttttctcaatcaaagccttatggctcttttgtttccaattctctaaattctca 30372093  T

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