View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9323_low_11 (Length: 316)
Name: NF9323_low_11
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31422862 - 31423160
Alignment:
| Q |
1 |
gagtaaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatggaaatatactcttttatatgctctctgttggatcagttcggttgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31422862 |
gagtaaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatgaaaatatactcttttatatgctctctgttggatcagttcggttgaac |
31422961 |
T |
|
| Q |
101 |
cgaaccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatctgtcctactttggcccgtatgtctatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31422962 |
cgaaccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccatatccaaccccaatctgtcctactttggcccgtatgtctatttg |
31423061 |
T |
|
| Q |
201 |
ctgaactgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttggtaactcttttaaaactcatgcatcttat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31423062 |
ctgaactgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttggtaactcttttaaaactcatgcatcttat |
31423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 20622591 - 20622889
Alignment:
| Q |
1 |
gagtaaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatggaaatatactcttttatatgctctctgttggatcagttcggttgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20622591 |
gagtaaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatgaaaatatactcttttatatgctctctgttggatcagttcggttgaac |
20622690 |
T |
|
| Q |
101 |
cgaaccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatctgtcctactttggcccgtatgtctatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20622691 |
cgaaccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatctgtcctactttggcccgtatgtctatttg |
20622790 |
T |
|
| Q |
201 |
ctgaactgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttggtaactcttttaaaactcatgcatcttat |
299 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20622791 |
ctgaactgattttcttactagctgatatatccctgttcatgctactgcacccctccctgtatatattttagtaactcttttaaaactcatgcatcttat |
20622889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 44374090 - 44374144
Alignment:
| Q |
244 |
actgcacccctccctgtatatattttggtaactcttttaaaactcatgcatctta |
298 |
Q |
| |
|
|||||||||||| ||| |||||| || |||| ||| ||||||||||||||||||| |
|
|
| T |
44374090 |
actgcacccctctctgcatatatcttagtaattctgttaaaactcatgcatctta |
44374144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 44390001 - 44390055
Alignment:
| Q |
244 |
actgcacccctccctgtatatattttggtaactcttttaaaactcatgcatctta |
298 |
Q |
| |
|
|||||||||||| ||| |||||| || |||| ||| ||||||||||||||||||| |
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|
| T |
44390001 |
actgcacccctctctgcatatatcttagtaattctgttaaaactcatgcatctta |
44390055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 12997677 - 12997971
Alignment:
| Q |
5 |
aaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatggaaatatactcttttatatgctctctgttggatcagttcggttgaaccgaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997677 |
aaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatggaaatatactcttttatatgctctctgttggatcagttcggttgaaccgaa |
12997776 |
T |
|
| Q |
105 |
ccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatctgtcctactttggcccgtatgtctatttgctga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||| |
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|
| T |
12997777 |
ccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatatatcctaatttgacccgtatgtctatttgctga |
12997876 |
T |
|
| Q |
205 |
actgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttggtaactcttttaaaactcatgcatcttat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
12997877 |
actgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttagtaactcttttaaaactcatgcatcttat |
12997971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 4838620 - 4838322
Alignment:
| Q |
1 |
gagtaaccggtttgatagagagagaaggtcatgagcaaaatgacttaaaaatggaaatatactcttttatatgctctctgttggatcagttcggttgaac |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
4838620 |
gagtaaccgttttgatagagagagaaggtcatgagcaaaatgacttaaaaatggaaatatactcttttatatgctctcagttggataagttcggttgaac |
4838521 |
T |
|
| Q |
101 |
cgaaccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatctgtcctactttggcccgtatgtctatttg |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
4838520 |
caaaccggtttccgaaccgatccaactcttcctccctaaaccggtttactgatccgtatccaaccccaatctatcctattttggcccgtatgtctatttg |
4838421 |
T |
|
| Q |
201 |
ctgaactgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttggtaactcttttaaaactcatgcatcttat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4838420 |
ctgaactgattttcttactagctgttatatccctgttcatgctactgcacccctccctgtatatattttagtaactcttttaaaactcatgcatcttat |
4838322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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