View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9323_low_17 (Length: 244)
Name: NF9323_low_17
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4781665 - 4781437
Alignment:
| Q |
1 |
taacaaaaacaaatgcaatgtggttaaagtaatgtggttaaagtaagnnnnnnnnnn-cgtgcagacaacgatgaaacttaccacaattcttttgatcct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4781665 |
taacaaaaacaaatgcaatgtggttaaagtaatgtggttaaagtaagattttttttttcgtgcagacaacgatgaaacttaccacaattcttttgatcct |
4781566 |
T |
|
| Q |
100 |
taatatcagatacgactccttttgacctccaatccaaggatgaaggagcactacatgatgataagtgaacgtcgttcaccttcattgtgtcaatgtccgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4781565 |
taatatcagatacgactccttttgacctccaatccaaggatgaaggagcactacatgatgataagtgaacgtcgttcaccttcattgtgtcaatgtccgt |
4781466 |
T |
|
| Q |
200 |
gggcatgtcaatgttgtgtaagtatcttt |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4781465 |
gggcatgtcaatgttgtgtaagtatcttt |
4781437 |
T |
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