View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9323_low_21 (Length: 229)
Name: NF9323_low_21
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11593217 - 11592995
Alignment:
| Q |
1 |
caacaaccaaacacaatcgtcaaagaaggacacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctgaac |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11593217 |
caacaaccaaacacaattgtcaaagaaggtcacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctgaac |
11593118 |
T |
|
| Q |
101 |
aacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagatagaatcaaagaagctgcttctgttctaccaaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
11593117 |
aacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacat |
11593018 |
T |
|
| Q |
201 |
gggtcaaggaatttcacatgatg |
223 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
11593017 |
gggtcaaggaatttcacaagatg |
11592995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11644902 - 11645124
Alignment:
| Q |
1 |
caacaaccaaacacaatcgtcaaagaaggacacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctgaac |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11644902 |
caacaaccaaacacaattgtcaaagaaggtcacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctgaac |
11645001 |
T |
|
| Q |
101 |
aacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagatagaatcaaagaagctgcttctgttctaccaaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
11645002 |
aacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacat |
11645101 |
T |
|
| Q |
201 |
gggtcaaggaatttcacatgatg |
223 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
11645102 |
gggtcaaggaatttcacaagatg |
11645124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 31069243 - 31069351
Alignment:
| Q |
109 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagatagaatcaaagaagctgcttctgttctaccaaacatgggtcaag |
208 |
Q |
| |
|
||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||| | ||| |||||| |||||| ||||| ||||| || ||||||| |
|
|
| T |
31069243 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
31069341 |
T |
|
| Q |
209 |
gaatttcaca |
218 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31069342 |
gaatatcaca |
31069351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 39126935 - 39126987
Alignment:
| Q |
42 |
tgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacc |
95 |
Q |
| |
|
|||||||||||| || |||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
39126935 |
tgttgttgaatacgaccaagatagttaccaaagcacc-aaatctcaatcttacc |
39126987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University