View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9323_low_3 (Length: 569)
Name: NF9323_low_3
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 45806235 - 45805824
Alignment:
| Q |
14 |
agacggaaacaatacaggataacttggttgcacgattacacaaacggggaacataatcacgagttagacatctaagaattcattatttagtcctcgaaat |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
45806235 |
agacggaaacaatacaggataacttggttgcacaattacacaaacggggaacataatcacaagttagacatctaacaattcattatttagtcctcaaaat |
45806136 |
T |
|
| Q |
114 |
tgtagggtcagacataaacaaaattctaacacgatcactgaattgaaaatgctcaatcacattagccactttgagatgatctaaatgactaacttgacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
45806135 |
tgtagggtcagacataaacaaaattctaacacgatcactgaattgaaaatgctcaatcacattagccactttgagatgatctcaatgactaaattgacca |
45806036 |
T |
|
| Q |
214 |
gactatcaacaggatcaaggaggttttttaatttcatatcaaattatctaatctctaaatttcaggactaaaatcaggattcaatcactnnnnnnnnnnc |
313 |
Q |
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| T |
45806035 |
gcctatcaacaggatcaaggaggttttttaatttcatatcaaattatctaatctctaaatttcaggactaaaatcagaattcaatcactaaaaaaaaaac |
45805936 |
T |
|
| Q |
314 |
acattgtgcaaaccactaaccgcagctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctgatatcacaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45805935 |
acattgtgcaaaccactaaccgcagctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctgatatcacaa |
45805836 |
T |
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| Q |
414 |
caacgtaacatt |
425 |
Q |
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| T |
45805835 |
caacgtaacatt |
45805824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 24495902 - 24495982
Alignment:
| Q |
324 |
aaccactaaccgcagctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctg |
404 |
Q |
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| T |
24495902 |
aaccacttaccgccgctctcatttgattcaatcctccattgcacgacaccatcaagtaaccattgtttttataaacccctg |
24495982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 21106498 - 21106564
Alignment:
| Q |
338 |
gctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctg |
404 |
Q |
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| T |
21106498 |
gctctcatttgattcaatcctccattacacgacaccatcaagtaaccattgtttttataaacccctg |
21106564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 21109748 - 21109814
Alignment:
| Q |
338 |
gctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctg |
404 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |||| |
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| T |
21109748 |
gctctcatttgattcaatcctccattacacgacaccatcaagtaaccattgtttttataaacccctg |
21109814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 21113705 - 21113771
Alignment:
| Q |
338 |
gctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctg |
404 |
Q |
| |
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|||||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |||| |
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| T |
21113705 |
gctctcatttgattcaatcctccattacacgacaccatcaagtaaccattgtttttataaacccctg |
21113771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 21114960 - 21115026
Alignment:
| Q |
338 |
gctctcatttgattcaatcctccattgcaggaaaccatcaagtatccattgtttttgtaaactcctg |
404 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |||| |
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| T |
21114960 |
gctctcatttgattcaatcctccattacacgacaccatcaagtaaccattgtttttataaacccctg |
21115026 |
T |
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