View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9323_low_4 (Length: 406)
Name: NF9323_low_4
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 28907993 - 28908388
Alignment:
| Q |
1 |
taaattccagcacacttatgtaaactaactaagcaaaccaaaatatagagaatttacctggccaactcgtccaaatccacaaataatgatatgatcttgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28907993 |
taaattccagcacatttatgtaaactaactaagcaaaccaaaatatagagaatttacctggccaactcgtccaaatccacaaataatgatatgatcttgc |
28908092 |
T |
|
| Q |
101 |
agatcatctgtctgtaaaagatgacatccaaaattcagtaactactaagtttgtacgtcaactccaaataaaaaattgtaaatggcaaaactacaggtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28908093 |
agatcatctgtctgtaaaagatgacatccaaaattcagtaactactaagtttgtacgtcaactccaaataaaaaaatgtaaatggcaaaactacaggtgt |
28908192 |
T |
|
| Q |
201 |
cagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccatgtgcaactaacgaagttacagggctgcaaccaatttaagagattttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28908193 |
cagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccatgtgcaactaacgaagttacagggctgcaaccaatttaagagattttac |
28908292 |
T |
|
| Q |
301 |
ctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatggagtgatgtccat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28908293 |
ctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatggagtgatggccat |
28908388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 11847897 - 11847812
Alignment:
| Q |
299 |
acctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatgg |
384 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
11847897 |
acctcactttctacaggtagtaagcttcgaacatcatgttgctcaaaacgggaagcaatcagctggcctccttcgcctagccatgg |
11847812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 11848228 - 11848163
Alignment:
| Q |
56 |
acctggccaactcgtccaaatccacaaataatgatatgatcttgcagatcatctgtctgtaaaaga |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
11848228 |
acctggccaactcgcccaaatccacaaataatgatatgatcacgcagatcgtctgtctgaaaaaga |
11848163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University